Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.78□□□□□ -0.04
RFX3P48380 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.78□□□□□ -0.04
RFX3P48380 FAM86GP-201ENST00000448322 971 ntBASIC14.78□□□□□ -0.04
RFX3P48380 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.78□□□□□ -0.04
RFX3P48380 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
RFX3P48380 BANF1P1-201ENST00000553684 263 ntBASIC14.78□□□□□ -0.04
RFX3P48380 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.78□□□□□ -0.04
RFX3P48380 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.78□□□□□ -0.04
RFX3P48380 AL589739.1-201ENST00000607720 493 ntBASIC14.78□□□□□ -0.04
RFX3P48380 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.78□□□□□ -0.04
RFX3P48380 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.78□□□□□ -0.04
RFX3P48380 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
RFX3P48380 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.78□□□□□ -0.04
RFX3P48380 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
RFX3P48380 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.78□□□□□ -0.04
RFX3P48380 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RFX3P48380 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.77□□□□□ -0.04
RFX3P48380 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
RFX3P48380 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.77□□□□□ -0.04
RFX3P48380 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RFX3P48380 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RFX3P48380 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
RFX3P48380 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RFX3P48380 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RFX3P48380 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RFX3P48380 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.77□□□□□ -0.04
RFX3P48380 TUBB3P1-201ENST00000405796 1332 ntBASIC14.77□□□□□ -0.04
RFX3P48380 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
RFX3P48380 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.77□□□□□ -0.04
RFX3P48380 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.77□□□□□ -0.04
RFX3P48380 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
RFX3P48380 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.77□□□□□ -0.05
RFX3P48380 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.77□□□□□ -0.05
RFX3P48380 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.77□□□□□ -0.05
RFX3P48380 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.77□□□□□ -0.05
RFX3P48380 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.77□□□□□ -0.05
RFX3P48380 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.77□□□□□ -0.05
RFX3P48380 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.77□□□□□ -0.05
RFX3P48380 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.77□□□□□ -0.05
RFX3P48380 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.77□□□□□ -0.05
RFX3P48380 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.77□□□□□ -0.05
RFX3P48380 AC006058.4-201ENST00000624016 1670 ntBASIC14.77□□□□□ -0.05
RFX3P48380 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RFX3P48380 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.76□□□□□ -0.05
RFX3P48380 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
RFX3P48380 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.76□□□□□ -0.05
RFX3P48380 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
RFX3P48380 AL035456.1-201ENST00000456064 1369 ntBASIC14.76□□□□□ -0.05
RFX3P48380 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.76□□□□□ -0.05
RFX3P48380 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.76□□□□□ -0.05
RFX3P48380 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
RFX3P48380 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.76□□□□□ -0.05
RFX3P48380 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RFX3P48380 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms