Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.43■□□□□ 0.54
BRCA1P38398 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.43■□□□□ 0.54
BRCA1P38398 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.43■□□□□ 0.54
BRCA1P38398 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC18.42■□□□□ 0.54
BRCA1P38398 MST1L-201ENST00000442552 2185 ntBASIC18.42■□□□□ 0.54
BRCA1P38398 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.42■□□□□ 0.54
BRCA1P38398 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.42■□□□□ 0.54
BRCA1P38398 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.42■□□□□ 0.54
BRCA1P38398 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
BRCA1P38398 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC18.42■□□□□ 0.54
BRCA1P38398 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
BRCA1P38398 AC027139.1-201ENST00000565286 951 ntBASIC18.42■□□□□ 0.54
BRCA1P38398 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC18.42■□□□□ 0.54
BRCA1P38398 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 AC069224.1-201ENST00000566372 1715 ntBASIC18.42■□□□□ 0.54
BRCA1P38398 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.42■□□□□ 0.54
BRCA1P38398 AL133373.2-201ENST00000623187 2828 ntBASIC18.42■□□□□ 0.54
BRCA1P38398 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
BRCA1P38398 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
BRCA1P38398 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BRCA1P38398 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.41■□□□□ 0.54
BRCA1P38398 AC012441.2-201ENST00000444843 739 ntBASIC18.41■□□□□ 0.54
BRCA1P38398 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC18.41■□□□□ 0.54
BRCA1P38398 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 NUDT4P2-201ENST00000578341 546 ntBASIC18.41■□□□□ 0.54
BRCA1P38398 MIR3188-201ENST00000583494 85 ntBASIC18.41■□□□□ 0.54
BRCA1P38398 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.41■□□□□ 0.54
BRCA1P38398 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
BRCA1P38398 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
BRCA1P38398 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.41■□□□□ 0.54
BRCA1P38398 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
BRCA1P38398 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
BRCA1P38398 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.41■□□□□ 0.54
BRCA1P38398 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.41■□□□□ 0.54
BRCA1P38398 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC18.41■□□□□ 0.54
BRCA1P38398 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC18.41■□□□□ 0.54
BRCA1P38398 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
BRCA1P38398 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC18.41■□□□□ 0.54
BRCA1P38398 AC004837.1-201ENST00000446267 564 ntBASIC18.41■□□□□ 0.54
BRCA1P38398 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC18.41■□□□□ 0.54
BRCA1P38398 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC18.41■□□□□ 0.54
BRCA1P38398 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC18.41■□□□□ 0.54
BRCA1P38398 RNF146-211ENST00000609447 607 ntTSL 4 BASIC18.41■□□□□ 0.54
BRCA1P38398 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
BRCA1P38398 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
BRCA1P38398 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.4■□□□□ 0.54
BRCA1P38398 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BRCA1P38398 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.4■□□□□ 0.54
BRCA1P38398 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.4■□□□□ 0.54
BRCA1P38398 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
BRCA1P38398 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
BRCA1P38398 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BRCA1P38398 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
BRCA1P38398 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC18.4■□□□□ 0.54
BRCA1P38398 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC18.4■□□□□ 0.54
BRCA1P38398 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC18.4■□□□□ 0.54
BRCA1P38398 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.4■□□□□ 0.54
BRCA1P38398 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
BRCA1P38398 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC18.4■□□□□ 0.54
BRCA1P38398 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
BRCA1P38398 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
BRCA1P38398 REXO1L4P-201ENST00000605109 1937 ntBASIC18.4■□□□□ 0.54
BRCA1P38398 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BRCA1P38398 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
BRCA1P38398 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
BRCA1P38398 AC020910.5-201ENST00000623668 1865 ntBASIC18.39■□□□□ 0.54
BRCA1P38398 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.39■□□□□ 0.54
BRCA1P38398 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
BRCA1P38398 NHP2-202ENST00000314397 599 ntTSL 2 BASIC18.39■□□□□ 0.54
BRCA1P38398 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
BRCA1P38398 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.39■□□□□ 0.54
BRCA1P38398 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
BRCA1P38398 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms