Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.96■□□□□ 0.47
SCN4AP35499 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SCN4AP35499 AC026320.2-201ENST00000434379 478 ntBASIC17.96■□□□□ 0.47
SCN4AP35499 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.96■□□□□ 0.47
SCN4AP35499 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 ORAOV1P1-201ENST00000503108 395 ntBASIC17.96■□□□□ 0.47
SCN4AP35499 POLD4-208ENST00000532830 904 ntTSL 3 BASIC17.96■□□□□ 0.47
SCN4AP35499 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC17.96■□□□□ 0.47
SCN4AP35499 AP001527.2-201ENST00000614441 631 ntBASIC17.96■□□□□ 0.47
SCN4AP35499 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.96■□□□□ 0.47
SCN4AP35499 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SCN4AP35499 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.96■□□□□ 0.47
SCN4AP35499 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.96■□□□□ 0.47
SCN4AP35499 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
SCN4AP35499 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SCN4AP35499 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
SCN4AP35499 AC011840.2-201ENST00000563063 1520 ntBASIC17.96■□□□□ 0.46
SCN4AP35499 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 KRT18P36-201ENST00000411618 1276 ntBASIC17.95■□□□□ 0.46
SCN4AP35499 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SCN4AP35499 FTH1P22-201ENST00000456305 520 ntBASIC17.95■□□□□ 0.46
SCN4AP35499 NUDT4P2-201ENST00000578341 546 ntBASIC17.95■□□□□ 0.46
SCN4AP35499 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC17.95■□□□□ 0.46
SCN4AP35499 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC17.95■□□□□ 0.46
SCN4AP35499 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
SCN4AP35499 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.95■□□□□ 0.46
SCN4AP35499 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 AC006058.4-201ENST00000624016 1670 ntBASIC17.95■□□□□ 0.46
SCN4AP35499 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SCN4AP35499 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC17.95■□□□□ 0.46
SCN4AP35499 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
SCN4AP35499 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC17.95■□□□□ 0.46
SCN4AP35499 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC17.95■□□□□ 0.46
SCN4AP35499 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC17.95■□□□□ 0.46
SCN4AP35499 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC17.95■□□□□ 0.46
SCN4AP35499 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC17.95■□□□□ 0.46
SCN4AP35499 MRPL22P1-201ENST00000505398 616 ntBASIC17.95■□□□□ 0.46
SCN4AP35499 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC17.95■□□□□ 0.46
SCN4AP35499 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
SCN4AP35499 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC17.95■□□□□ 0.46
SCN4AP35499 AC244250.3-201ENST00000620749 366 ntBASIC17.95■□□□□ 0.46
SCN4AP35499 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.95■□□□□ 0.46
SCN4AP35499 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SCN4AP35499 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC17.95■□□□□ 0.46
SCN4AP35499 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.94■□□□□ 0.46
SCN4AP35499 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN4AP35499 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
SCN4AP35499 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.94■□□□□ 0.46
SCN4AP35499 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC17.94■□□□□ 0.46
SCN4AP35499 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SCN4AP35499 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SCN4AP35499 ETV2-207ENST00000619399 994 ntTSL 5 BASIC17.94■□□□□ 0.46
SCN4AP35499 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.94■□□□□ 0.46
SCN4AP35499 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN4AP35499 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SCN4AP35499 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN4AP35499 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN4AP35499 AC015909.3-201ENST00000572855 1794 ntBASIC17.94■□□□□ 0.46
SCN4AP35499 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms