Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
CIITAP33076 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 AC112693.3-201ENST00000624819 1983 ntBASIC17.51■□□□□ 0.39
CIITAP33076 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 PAUPAR-201ENST00000630360 2965 ntBASIC17.51■□□□□ 0.39
CIITAP33076 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.51■□□□□ 0.39
CIITAP33076 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CIITAP33076 AC136621.1-201ENST00000624017 2304 ntBASIC17.5■□□□□ 0.39
CIITAP33076 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.5■□□□□ 0.39
CIITAP33076 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CIITAP33076 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.5■□□□□ 0.39
CIITAP33076 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.5■□□□□ 0.39
CIITAP33076 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CIITAP33076 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.5■□□□□ 0.39
CIITAP33076 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CIITAP33076 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.5■□□□□ 0.39
CIITAP33076 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.5■□□□□ 0.39
CIITAP33076 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.5■□□□□ 0.39
CIITAP33076 GIMAP3P-201ENST00000495150 836 ntBASIC17.5■□□□□ 0.39
CIITAP33076 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.5■□□□□ 0.39
CIITAP33076 AP001063.1-201ENST00000568332 529 ntBASIC17.5■□□□□ 0.39
CIITAP33076 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.5■□□□□ 0.39
CIITAP33076 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.5■□□□□ 0.39
CIITAP33076 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.5■□□□□ 0.39
CIITAP33076 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.5■□□□□ 0.39
CIITAP33076 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.5■□□□□ 0.39
CIITAP33076 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.5■□□□□ 0.39
CIITAP33076 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.5■□□□□ 0.39
CIITAP33076 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.5■□□□□ 0.39
CIITAP33076 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CIITAP33076 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CIITAP33076 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
CIITAP33076 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CIITAP33076 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.49■□□□□ 0.39
CIITAP33076 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.49■□□□□ 0.39
CIITAP33076 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.49■□□□□ 0.39
CIITAP33076 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.49■□□□□ 0.39
CIITAP33076 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.49■□□□□ 0.39
CIITAP33076 KRT17P7-201ENST00000451704 1104 ntBASIC17.49■□□□□ 0.39
CIITAP33076 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.49■□□□□ 0.39
CIITAP33076 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CIITAP33076 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.49■□□□□ 0.39
CIITAP33076 MIR5189-201ENST00000577370 114 ntBASIC17.49■□□□□ 0.39
CIITAP33076 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.49■□□□□ 0.39
CIITAP33076 PRSS30P-206ENST00000641773 873 ntBASIC17.49■□□□□ 0.39
CIITAP33076 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CIITAP33076 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
CIITAP33076 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
CIITAP33076 AC011270.2-201ENST00000624293 2550 ntBASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms