Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC19.17■□□□□ 0.66
COL5A3P25940 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC19.17■□□□□ 0.66
COL5A3P25940 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC19.17■□□□□ 0.66
COL5A3P25940 AC051619.9-201ENST00000623237 597 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 AL353726.2-201ENST00000623259 884 ntBASIC19.17■□□□□ 0.66
COL5A3P25940 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A3P25940 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC19.16■□□□□ 0.66
COL5A3P25940 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.16■□□□□ 0.66
COL5A3P25940 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.16■□□□□ 0.66
COL5A3P25940 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 AD000864.1-201ENST00000624076 2295 ntBASIC19.16■□□□□ 0.66
COL5A3P25940 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC19.16■□□□□ 0.66
COL5A3P25940 RPL18P13-201ENST00000478088 569 ntBASIC19.16■□□□□ 0.66
COL5A3P25940 LY6E-208ENST00000520531 490 ntTSL 2 BASIC19.16■□□□□ 0.66
COL5A3P25940 CFL1-206ENST00000527344 962 ntTSL 2 BASIC19.16■□□□□ 0.66
COL5A3P25940 MIR3677-201ENST00000578964 60 ntBASIC19.16■□□□□ 0.66
COL5A3P25940 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC19.16■□□□□ 0.66
COL5A3P25940 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 CAP2P1-201ENST00000557743 1390 ntBASIC19.16■□□□□ 0.66
COL5A3P25940 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A3P25940 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC19.16■□□□□ 0.66
COL5A3P25940 ZBTB45P1-201ENST00000452761 1456 ntBASIC19.15■□□□□ 0.66
COL5A3P25940 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC19.15■□□□□ 0.66
COL5A3P25940 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC19.15■□□□□ 0.66
COL5A3P25940 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL5A3P25940 AL662844.4-201ENST00000606367 2838 ntBASIC19.15■□□□□ 0.66
COL5A3P25940 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 HNRNPA1P41-201ENST00000397777 928 ntBASIC19.15■□□□□ 0.66
COL5A3P25940 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC19.15■□□□□ 0.66
COL5A3P25940 AC104073.2-201ENST00000453737 312 ntBASIC19.15■□□□□ 0.66
COL5A3P25940 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC19.15■□□□□ 0.66
COL5A3P25940 DUX4L46-201ENST00000566845 751 ntBASIC19.15■□□□□ 0.66
COL5A3P25940 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
COL5A3P25940 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
COL5A3P25940 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
COL5A3P25940 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC19.15■□□□□ 0.66
COL5A3P25940 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A3P25940 AC006058.4-201ENST00000624016 1670 ntBASIC19.15■□□□□ 0.66
COL5A3P25940 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.15■□□□□ 0.66
COL5A3P25940 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COL5A3P25940 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC19.15■□□□□ 0.66
COL5A3P25940 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COL5A3P25940 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL5A3P25940 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL5A3P25940 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL5A3P25940 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL5A3P25940 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL5A3P25940 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL5A3P25940 AC098935.1-201ENST00000446057 611 ntBASIC19.14■□□□□ 0.66
COL5A3P25940 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL5A3P25940 ALG3P1-201ENST00000508806 1114 ntBASIC19.14■□□□□ 0.66
COL5A3P25940 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC19.14■□□□□ 0.66
COL5A3P25940 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC19.14■□□□□ 0.66
COL5A3P25940 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC19.14■□□□□ 0.66
COL5A3P25940 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL5A3P25940 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.14■□□□□ 0.65
COL5A3P25940 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.14■□□□□ 0.65
COL5A3P25940 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
COL5A3P25940 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL5A3P25940 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC19.14■□□□□ 0.65
COL5A3P25940 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL5A3P25940 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC19.14■□□□□ 0.65
COL5A3P25940 AC078875.1-201ENST00000431907 724 ntBASIC19.14■□□□□ 0.65
COL5A3P25940 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC19.14■□□□□ 0.65
COL5A3P25940 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC19.14■□□□□ 0.65
COL5A3P25940 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC19.14■□□□□ 0.65
COL5A3P25940 AC100827.2-201ENST00000563214 1194 ntBASIC19.14■□□□□ 0.65
COL5A3P25940 MIR4750-201ENST00000584564 56 ntBASIC19.14■□□□□ 0.65
COL5A3P25940 WDR7-208ENST00000589935 544 ntTSL 4 BASIC19.14■□□□□ 0.65
COL5A3P25940 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC19.14■□□□□ 0.65
COL5A3P25940 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A3P25940 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms