Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC13.81□□□□□ -0.2
LMX1BO60663 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.8□□□□□ -0.2
LMX1BO60663 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 CRB3P1-201ENST00000449338 276 ntBASIC13.8□□□□□ -0.2
LMX1BO60663 AP005018.1-201ENST00000525475 301 ntBASIC13.8□□□□□ -0.2
LMX1BO60663 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 AP000842.3-202ENST00000569238 1080 ntBASIC13.8□□□□□ -0.2
LMX1BO60663 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.8□□□□□ -0.2
LMX1BO60663 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.8□□□□□ -0.2
LMX1BO60663 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
LMX1BO60663 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LMX1BO60663 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.8□□□□□ -0.2
LMX1BO60663 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LMX1BO60663 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.79□□□□□ -0.2
LMX1BO60663 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
LMX1BO60663 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.79□□□□□ -0.2
LMX1BO60663 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
LMX1BO60663 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
LMX1BO60663 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
LMX1BO60663 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.79□□□□□ -0.2
LMX1BO60663 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.79□□□□□ -0.2
LMX1BO60663 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.79□□□□□ -0.2
LMX1BO60663 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
LMX1BO60663 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.79□□□□□ -0.2
LMX1BO60663 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.79□□□□□ -0.2
LMX1BO60663 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.79□□□□□ -0.2
LMX1BO60663 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms