Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.38□□□□□ -0.27
SDCBPO00560 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.38□□□□□ -0.27
SDCBPO00560 TFAMP1-201ENST00000412727 736 ntBASIC13.38□□□□□ -0.27
SDCBPO00560 GPX1P2-201ENST00000429271 606 ntBASIC13.38□□□□□ -0.27
SDCBPO00560 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.38□□□□□ -0.27
SDCBPO00560 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 RN7SL589P-201ENST00000481268 310 ntBASIC13.38□□□□□ -0.27
SDCBPO00560 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.38□□□□□ -0.27
SDCBPO00560 POLD2P1-201ENST00000511220 997 ntBASIC13.38□□□□□ -0.27
SDCBPO00560 AC105233.2-201ENST00000523697 349 ntBASIC13.38□□□□□ -0.27
SDCBPO00560 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.38□□□□□ -0.27
SDCBPO00560 AF228730.5-201ENST00000530288 346 ntBASIC13.38□□□□□ -0.27
SDCBPO00560 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.38□□□□□ -0.27
SDCBPO00560 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.38□□□□□ -0.27
SDCBPO00560 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.38□□□□□ -0.27
SDCBPO00560 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.38□□□□□ -0.27
SDCBPO00560 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SDCBPO00560 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.38□□□□□ -0.27
SDCBPO00560 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 AL359258.3-201ENST00000622910 2331 ntBASIC13.38□□□□□ -0.27
SDCBPO00560 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.37□□□□□ -0.27
SDCBPO00560 AC005089.1-201ENST00000619486 2241 ntBASIC13.37□□□□□ -0.27
SDCBPO00560 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.37□□□□□ -0.27
SDCBPO00560 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 AC013726.1-201ENST00000563747 2285 ntBASIC13.37□□□□□ -0.27
SDCBPO00560 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 KRT8P44-201ENST00000441609 1350 ntBASIC13.37□□□□□ -0.27
SDCBPO00560 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SDCBPO00560 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.37□□□□□ -0.27
SDCBPO00560 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.37□□□□□ -0.27
SDCBPO00560 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.37□□□□□ -0.27
SDCBPO00560 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 AL138918.1-201ENST00000568306 659 ntBASIC13.37□□□□□ -0.27
SDCBPO00560 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.37□□□□□ -0.27
SDCBPO00560 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SDCBPO00560 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
SDCBPO00560 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SDCBPO00560 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SDCBPO00560 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
SDCBPO00560 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 AC127383.1-201ENST00000444697 1800 ntBASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms