Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 AC004461.1-201ENST00000412461 403 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 HIST3H2BA-201ENST00000436555 524 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.09■□□□□ 0.01
SLC28A1O00337 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.09■□□□□ 0.01
SLC28A1O00337 YBX1P5-201ENST00000509441 847 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.09■□□□□ 0.01
SLC28A1O00337 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.09■□□□□ 0.01
SLC28A1O00337 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.09■□□□□ 0.01
SLC28A1O00337 AL133215.2-201ENST00000609242 977 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 AC084364.1-201ENST00000551967 1556 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
SLC28A1O00337 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.09■□□□□ 0.01
SLC28A1O00337 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 WASH3P-207ENST00000560956 1394 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
SLC28A1O00337 FO538757.1-201ENST00000623083 1397 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.09■□□□□ 0.01
SLC28A1O00337 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
SLC28A1O00337 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0.01
SLC28A1O00337 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SLC28A1O00337 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SLC28A1O00337 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
SLC28A1O00337 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
SLC28A1O00337 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
SLC28A1O00337 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SLC28A1O00337 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SLC28A1O00337 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0.01
SLC28A1O00337 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
SLC28A1O00337 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.08■□□□□ 0.01
SLC28A1O00337 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.08■□□□□ 0.01
SLC28A1O00337 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
SLC28A1O00337 AC097376.2-205ENST00000610159 5334 ntBASIC15.08■□□□□ 0
SLC28A1O00337 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SLC28A1O00337 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 MROH4P-201ENST00000431302 1578 ntBASIC15.08■□□□□ 0
SLC28A1O00337 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 ZBED1P1-201ENST00000502364 1930 ntBASIC15.08■□□□□ 0
SLC28A1O00337 AC013726.1-201ENST00000563747 2285 ntBASIC15.08■□□□□ 0
SLC28A1O00337 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.08■□□□□ 0
SLC28A1O00337 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 CICP24-201ENST00000605464 2705 ntBASIC15.08■□□□□ 0
SLC28A1O00337 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.08■□□□□ 0
SLC28A1O00337 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.08■□□□□ 0
SLC28A1O00337 AP000344.2-201ENST00000512987 629 ntBASIC15.08■□□□□ 0
SLC28A1O00337 AC093520.2-201ENST00000561830 333 ntBASIC15.08■□□□□ 0
SLC28A1O00337 MIR4469-201ENST00000583919 79 ntBASIC15.08■□□□□ 0
SLC28A1O00337 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.08■□□□□ 0
SLC28A1O00337 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.08■□□□□ 0
SLC28A1O00337 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
SLC28A1O00337 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
SLC28A1O00337 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.08■□□□□ 0
SLC28A1O00337 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.08■□□□□ 0
SLC28A1O00337 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.08■□□□□ 0
SLC28A1O00337 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SLC28A1O00337 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.07■□□□□ 0
SLC28A1O00337 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.07■□□□□ 0
SLC28A1O00337 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms