Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 DIO1-215ENST00000610607 796 ntTSL 5 BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 AC079336.7-201ENST00000623428 1078 ntBASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
SHROOM4Q9ULL8 TK1-203ENST00000588734 1681 ntTSL 2 BASIC29.39■■■□□ 2.29
SHROOM4Q9ULL8 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 AP001582.1-201ENST00000525856 295 ntBASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 CU633904.3-201ENST00000624042 1029 ntBASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 WAC-202ENST00000347934 2839 ntTSL 5 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 POLL-217ENST00000628479 1953 ntTSL 5 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM4Q9ULL8 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 HCG11-201ENST00000411553 5696 ntBASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 PRORSD1P-202ENST00000563365 2154 ntBASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM4Q9ULL8 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 ACTBP8-201ENST00000403258 1108 ntBASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 RNA5SP486-201ENST00000515961 83 ntBASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 PRKXP1-201ENST00000561423 1122 ntBASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 MIR769-201ENST00000390225 118 ntBASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 MIR1202-201ENST00000408529 83 ntBASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 SPTLC1P5-201ENST00000450718 252 ntBASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 NAT9-222ENST00000583476 583 ntTSL 3 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 AC132938.4-201ENST00000623835 848 ntBASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC29.36■■■□□ 2.29
SHROOM4Q9ULL8 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 AC022188.1-201ENST00000620960 1664 ntBASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
SHROOM4Q9ULL8 CYP46A4P-201ENST00000414953 267 ntBASIC29.35■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms