Protein–RNA interactions for Protein: Q9UHC9

NPC1L1, Niemann-Pick C1-like protein 1, humanhuman

Predictions only

Length 1,359 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1Q9UHC9 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPC1L1Q9UHC9 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC20.77■□□□□ 0.91
NPC1L1Q9UHC9 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
NPC1L1Q9UHC9 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPC1L1Q9UHC9 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 AC134312.5-201ENST00000568031 1313 ntBASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 KRT18P25-201ENST00000508931 1278 ntBASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 SLC25A47P1-201ENST00000531577 414 ntBASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 ZBED1P1-201ENST00000502364 1930 ntBASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC20.76■□□□□ 0.91
NPC1L1Q9UHC9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 REXO1L2P-201ENST00000425429 2069 ntBASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPC1L1Q9UHC9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 AC025279.2-201ENST00000569730 653 ntBASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC20.74■□□□□ 0.91
NPC1L1Q9UHC9 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms