Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AC084364.1-201ENST00000551967 1556 ntBASIC17.36■□□□□ 0.37
VTA1Q9NP79 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 AC007969.1-201ENST00000433675 447 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 MTX1P1-201ENST00000440904 838 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 AC104306.2-201ENST00000451877 341 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 AP001258.2-201ENST00000529891 490 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 KRT8P14-201ENST00000414254 1442 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 AL354989.2-201ENST00000435838 1540 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 AC015818.8-201ENST00000587907 1519 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.35■□□□□ 0.37
VTA1Q9NP79 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
VTA1Q9NP79 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VTA1Q9NP79 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 AC005695.3-201ENST00000614522 232 ntBASIC17.34■□□□□ 0.37
VTA1Q9NP79 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.34■□□□□ 0.37
VTA1Q9NP79 ENPP7P14-201ENST00000621765 1040 ntBASIC17.34■□□□□ 0.37
VTA1Q9NP79 AL008638.5-201ENST00000623814 1298 ntBASIC17.34■□□□□ 0.37
VTA1Q9NP79 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VTA1Q9NP79 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
VTA1Q9NP79 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VTA1Q9NP79 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
VTA1Q9NP79 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.33■□□□□ 0.37
VTA1Q9NP79 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VTA1Q9NP79 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
VTA1Q9NP79 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VTA1Q9NP79 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VTA1Q9NP79 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VTA1Q9NP79 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms