Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
USP28Q96RU2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.9■□□□□ 0.46
USP28Q96RU2 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.9■□□□□ 0.46
USP28Q96RU2 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.9■□□□□ 0.46
USP28Q96RU2 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.9■□□□□ 0.46
USP28Q96RU2 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
USP28Q96RU2 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.9■□□□□ 0.46
USP28Q96RU2 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.9■□□□□ 0.46
USP28Q96RU2 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
USP28Q96RU2 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
USP28Q96RU2 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.9■□□□□ 0.46
USP28Q96RU2 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
USP28Q96RU2 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.9■□□□□ 0.46
USP28Q96RU2 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
USP28Q96RU2 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.9■□□□□ 0.46
USP28Q96RU2 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.9■□□□□ 0.46
USP28Q96RU2 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
USP28Q96RU2 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
USP28Q96RU2 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
USP28Q96RU2 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
USP28Q96RU2 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.89■□□□□ 0.45
USP28Q96RU2 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 FGD5P1-202ENST00000614866 2498 ntBASIC17.89■□□□□ 0.45
USP28Q96RU2 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.89■□□□□ 0.45
USP28Q96RU2 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.89■□□□□ 0.45
USP28Q96RU2 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
USP28Q96RU2 RPL5P21-201ENST00000404620 815 ntBASIC17.89■□□□□ 0.45
USP28Q96RU2 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.89■□□□□ 0.45
USP28Q96RU2 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.89■□□□□ 0.45
USP28Q96RU2 AC025048.3-201ENST00000590609 569 ntBASIC17.89■□□□□ 0.45
USP28Q96RU2 AL589739.1-201ENST00000607720 493 ntBASIC17.89■□□□□ 0.45
USP28Q96RU2 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 AC005702.4-201ENST00000618393 416 ntBASIC17.89■□□□□ 0.45
USP28Q96RU2 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
USP28Q96RU2 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.89■□□□□ 0.45
USP28Q96RU2 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
USP28Q96RU2 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 AC023908.3-201ENST00000564211 3047 ntBASIC17.89■□□□□ 0.45
USP28Q96RU2 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
USP28Q96RU2 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.89■□□□□ 0.45
USP28Q96RU2 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
USP28Q96RU2 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP28Q96RU2 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.89■□□□□ 0.45
USP28Q96RU2 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.88■□□□□ 0.45
USP28Q96RU2 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.88■□□□□ 0.45
USP28Q96RU2 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
USP28Q96RU2 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.88■□□□□ 0.45
USP28Q96RU2 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.88■□□□□ 0.45
USP28Q96RU2 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
USP28Q96RU2 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 RPL37AP1-201ENST00000412502 279 ntBASIC17.88■□□□□ 0.45
USP28Q96RU2 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.88■□□□□ 0.45
USP28Q96RU2 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.88■□□□□ 0.45
USP28Q96RU2 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.88■□□□□ 0.45
USP28Q96RU2 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.88■□□□□ 0.45
USP28Q96RU2 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.88■□□□□ 0.45
USP28Q96RU2 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.88■□□□□ 0.45
USP28Q96RU2 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP28Q96RU2 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.88■□□□□ 0.45
USP28Q96RU2 AL512356.2-201ENST00000546955 174 ntBASIC17.88■□□□□ 0.45
USP28Q96RU2 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.88■□□□□ 0.45
USP28Q96RU2 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms