Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CHMP4CQ96CF2 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.71■□□□□ 0.58
CHMP4CQ96CF2 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CHMP4CQ96CF2 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
CHMP4CQ96CF2 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 PHKG1P2-201ENST00000457537 863 ntBASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4CQ96CF2 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 AC087481.3-201ENST00000602886 1894 ntBASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 AC092384.3-202ENST00000564646 2873 ntBASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 SPDYE17-201ENST00000412399 783 ntBASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 CRB3P1-201ENST00000449338 276 ntBASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 AL662799.1-202ENST00000614205 422 ntBASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 C8orf49-201ENST00000525043 1968 ntBASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4CQ96CF2 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms