Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 MIR326-201ENST00000362220 95 ntBASIC15.65■□□□□ 0.1
HMGB4Q8WW32 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.65■□□□□ 0.1
HMGB4Q8WW32 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 MIR1247-201ENST00000408206 136 ntBASIC15.65■□□□□ 0.1
HMGB4Q8WW32 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 AL118558.3-201ENST00000607414 1079 ntBASIC15.65■□□□□ 0.1
HMGB4Q8WW32 AP005019.2-201ENST00000615104 511 ntBASIC15.65■□□□□ 0.1
HMGB4Q8WW32 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
HMGB4Q8WW32 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.1
HMGB4Q8WW32 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.64■□□□□ 0.1
HMGB4Q8WW32 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 FLJ16779-201ENST00000612722 7638 ntBASIC15.64■□□□□ 0.09
HMGB4Q8WW32 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 GPAA1P2-201ENST00000417923 928 ntBASIC15.64■□□□□ 0.09
HMGB4Q8WW32 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 FAM86HP-204ENST00000513466 959 ntBASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AC078819.1-201ENST00000547454 765 ntBASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AC012085.1-201ENST00000548270 765 ntBASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AC145423.3-201ENST00000615987 467 ntBASIC15.64■□□□□ 0.09
HMGB4Q8WW32 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.64■□□□□ 0.09
HMGB4Q8WW32 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 PCDH8P1-201ENST00000428983 2773 ntBASIC15.64■□□□□ 0.09
HMGB4Q8WW32 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
HMGB4Q8WW32 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB4Q8WW32 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.63■□□□□ 0.09
HMGB4Q8WW32 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HMGB4Q8WW32 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms