Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AL359711.2-201ENST00000563105 872 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC017083.2-201ENST00000608069 979 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AL035456.1-201ENST00000456064 1369 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PCDHA1-201ENST00000378133 2726 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RPS19-201ENST00000221975 500 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RPL28-206ENST00000558752 671 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 FOXJ3-201ENST00000361346 5225 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 LGR6-203ENST00000367278 3567 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PRR29-204ENST00000577953 565 ntTSL 4 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AL162274.1-201ENST00000617191 1098 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 KRT18P34-201ENST00000488218 1270 ntBASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SYNE1Q8NF91 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 TPRX2P-201ENST00000535362 881 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC007431.3-201ENST00000623221 587 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms