Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TPM4P67936 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TPM4P67936 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TPM4P67936 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TPM4P67936 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TPM4P67936 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
TPM4P67936 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TPM4P67936 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TPM4P67936 AL359258.3-201ENST00000622910 2331 ntBASIC17.63■□□□□ 0.41
TPM4P67936 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
TPM4P67936 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.62■□□□□ 0.41
TPM4P67936 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.62■□□□□ 0.41
TPM4P67936 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.62■□□□□ 0.41
TPM4P67936 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.62■□□□□ 0.41
TPM4P67936 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
TPM4P67936 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.62■□□□□ 0.41
TPM4P67936 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TPM4P67936 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
TPM4P67936 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.62■□□□□ 0.41
TPM4P67936 AL450472.2-201ENST00000603663 1156 ntBASIC17.62■□□□□ 0.41
TPM4P67936 AL121912.1-201ENST00000603683 238 ntBASIC17.62■□□□□ 0.41
TPM4P67936 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TPM4P67936 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.62■□□□□ 0.41
TPM4P67936 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.62■□□□□ 0.41
TPM4P67936 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.62■□□□□ 0.41
TPM4P67936 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC17.62■□□□□ 0.41
TPM4P67936 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC17.62■□□□□ 0.41
TPM4P67936 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TPM4P67936 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TPM4P67936 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.61■□□□□ 0.41
TPM4P67936 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.61■□□□□ 0.41
TPM4P67936 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC17.61■□□□□ 0.41
TPM4P67936 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.61■□□□□ 0.41
TPM4P67936 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.61■□□□□ 0.41
TPM4P67936 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 LINC00528-201ENST00000600723 2160 ntBASIC17.61■□□□□ 0.41
TPM4P67936 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
TPM4P67936 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.61■□□□□ 0.41
TPM4P67936 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.61■□□□□ 0.41
TPM4P67936 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TPM4P67936 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.61■□□□□ 0.41
TPM4P67936 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TPM4P67936 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TPM4P67936 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
TPM4P67936 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.61■□□□□ 0.41
TPM4P67936 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TPM4P67936 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC17.6■□□□□ 0.41
TPM4P67936 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms