Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.42■□□□□ 0.06
LIMK1P53667 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
LIMK1P53667 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
LIMK1P53667 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
LIMK1P53667 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
LIMK1P53667 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.42■□□□□ 0.06
LIMK1P53667 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.42■□□□□ 0.06
LIMK1P53667 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.42■□□□□ 0.06
LIMK1P53667 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.42■□□□□ 0.06
LIMK1P53667 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.42■□□□□ 0.06
LIMK1P53667 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.42■□□□□ 0.06
LIMK1P53667 AP002490.2-201ENST00000524791 560 ntBASIC15.42■□□□□ 0.06
LIMK1P53667 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.42■□□□□ 0.06
LIMK1P53667 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC15.42■□□□□ 0.06
LIMK1P53667 NDUFV2P1-201ENST00000596415 907 ntBASIC15.42■□□□□ 0.06
LIMK1P53667 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 MIR7845-201ENST00000618396 99 ntBASIC15.42■□□□□ 0.06
LIMK1P53667 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
LIMK1P53667 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.42■□□□□ 0.06
LIMK1P53667 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
LIMK1P53667 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LIMK1P53667 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
LIMK1P53667 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 AZGP1P1-201ENST00000411909 902 ntBASIC15.41■□□□□ 0.06
LIMK1P53667 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 PTPA-218ENST00000435132 618 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 TARDBPP1-201ENST00000442013 1203 ntBASIC15.41■□□□□ 0.06
LIMK1P53667 HOMER2P2-201ENST00000451621 847 ntBASIC15.41■□□□□ 0.06
LIMK1P53667 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 RPSAP36-202ENST00000494591 1261 ntBASIC15.41■□□□□ 0.06
LIMK1P53667 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.41■□□□□ 0.06
LIMK1P53667 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.41■□□□□ 0.06
LIMK1P53667 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC15.41■□□□□ 0.06
LIMK1P53667 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 HLA-A-202ENST00000376806 1854 ntBASIC15.41■□□□□ 0.06
LIMK1P53667 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.41■□□□□ 0.06
LIMK1P53667 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
LIMK1P53667 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LIMK1P53667 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.41■□□□□ 0.06
LIMK1P53667 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms