Protein–RNA interactions for Protein: P43005

SLC1A1, Excitatory amino acid transporter 3, humanhuman

Predictions only

Length 524 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A1P43005 AP002414.2-201ENST00000591780 3365 ntBASIC16.4■□□□□ 0.22
SLC1A1P43005 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SLC1A1P43005 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SLC1A1P43005 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.4■□□□□ 0.22
SLC1A1P43005 UPF3AP3-201ENST00000420996 769 ntBASIC16.4■□□□□ 0.22
SLC1A1P43005 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.4■□□□□ 0.22
SLC1A1P43005 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.4■□□□□ 0.22
SLC1A1P43005 SERBP1P3-201ENST00000459980 809 ntBASIC16.4■□□□□ 0.22
SLC1A1P43005 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.4■□□□□ 0.22
SLC1A1P43005 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.4■□□□□ 0.22
SLC1A1P43005 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.4■□□□□ 0.22
SLC1A1P43005 AC010327.4-202ENST00000591484 748 ntBASIC16.4■□□□□ 0.22
SLC1A1P43005 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.4■□□□□ 0.22
SLC1A1P43005 MIR6080-201ENST00000617359 66 ntBASIC16.4■□□□□ 0.22
SLC1A1P43005 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 CICP24-201ENST00000605464 2705 ntBASIC16.4■□□□□ 0.22
SLC1A1P43005 Z97205.2-201ENST00000564697 1639 ntBASIC16.4■□□□□ 0.22
SLC1A1P43005 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SLC1A1P43005 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SLC1A1P43005 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.4■□□□□ 0.22
SLC1A1P43005 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SLC1A1P43005 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SLC1A1P43005 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC1A1P43005 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
SLC1A1P43005 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
SLC1A1P43005 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SLC1A1P43005 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 CETN4P-206ENST00000642099 2168 ntBASIC16.39■□□□□ 0.21
SLC1A1P43005 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SLC1A1P43005 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 AC211486.1-202ENST00000416371 468 ntBASIC16.39■□□□□ 0.21
SLC1A1P43005 BX842568.4-201ENST00000421222 227 ntBASIC16.39■□□□□ 0.21
SLC1A1P43005 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 AC211476.1-201ENST00000503899 468 ntBASIC16.39■□□□□ 0.21
SLC1A1P43005 SLED1-202ENST00000512051 380 ntBASIC16.39■□□□□ 0.21
SLC1A1P43005 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC1A1P43005 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.39■□□□□ 0.21
SLC1A1P43005 AL589739.1-201ENST00000607720 493 ntBASIC16.39■□□□□ 0.21
SLC1A1P43005 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SLC1A1P43005 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
SLC1A1P43005 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.39■□□□□ 0.21
SLC1A1P43005 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.39■□□□□ 0.21
SLC1A1P43005 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SLC1A1P43005 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC1A1P43005 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC1A1P43005 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.38■□□□□ 0.21
SLC1A1P43005 LINC02228-204ENST00000642115 2962 ntBASIC16.38■□□□□ 0.21
SLC1A1P43005 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SLC1A1P43005 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SLC1A1P43005 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SLC1A1P43005 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SLC1A1P43005 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.38■□□□□ 0.21
SLC1A1P43005 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC1A1P43005 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.38■□□□□ 0.21
SLC1A1P43005 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SLC1A1P43005 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms