Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MIR3147-201ENST00000577811 66 ntBASIC20.1■□□□□ 0.81
COL18A1P39060 AC005962.1-201ENST00000584100 773 ntBASIC20.1■□□□□ 0.81
COL18A1P39060 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC20.1■□□□□ 0.81
COL18A1P39060 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC20.1■□□□□ 0.81
COL18A1P39060 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL18A1P39060 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.09■□□□□ 0.81
COL18A1P39060 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC20.09■□□□□ 0.81
COL18A1P39060 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.09■□□□□ 0.81
COL18A1P39060 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC20.09■□□□□ 0.81
COL18A1P39060 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 AC006335.1-201ENST00000445200 547 ntBASIC20.09■□□□□ 0.81
COL18A1P39060 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC20.09■□□□□ 0.81
COL18A1P39060 CFL1-206ENST00000527344 962 ntTSL 2 BASIC20.09■□□□□ 0.81
COL18A1P39060 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC20.09■□□□□ 0.81
COL18A1P39060 DUX4L46-201ENST00000566845 751 ntBASIC20.09■□□□□ 0.81
COL18A1P39060 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC20.09■□□□□ 0.81
COL18A1P39060 AC012044.1-201ENST00000603431 297 ntBASIC20.09■□□□□ 0.81
COL18A1P39060 AC073352.2-201ENST00000609385 439 ntBASIC20.09■□□□□ 0.81
COL18A1P39060 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 AC011491.1-203ENST00000637688 543 ntBASIC20.09■□□□□ 0.81
COL18A1P39060 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.09■□□□□ 0.81
COL18A1P39060 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
COL18A1P39060 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
COL18A1P39060 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.09■□□□□ 0.81
COL18A1P39060 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.09■□□□□ 0.81
COL18A1P39060 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 AMT-204ENST00000427987 1646 ntTSL 5 BASIC20.09■□□□□ 0.81
COL18A1P39060 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL18A1P39060 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL18A1P39060 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL18A1P39060 CDC23-208ENST00000505120 455 ntTSL 3 BASIC20.08■□□□□ 0.81
COL18A1P39060 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC20.08■□□□□ 0.81
COL18A1P39060 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
COL18A1P39060 RN7SL736P-201ENST00000613111 269 ntBASIC20.08■□□□□ 0.81
COL18A1P39060 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL18A1P39060 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL18A1P39060 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL18A1P39060 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL18A1P39060 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL18A1P39060 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL18A1P39060 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL18A1P39060 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL18A1P39060 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL18A1P39060 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC20.08■□□□□ 0.8
COL18A1P39060 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
COL18A1P39060 RPSAP31-201ENST00000416648 895 ntBASIC20.08■□□□□ 0.8
COL18A1P39060 PFN2-202ENST00000423691 911 ntTSL 2 BASIC20.08■□□□□ 0.8
COL18A1P39060 RN7SL163P-201ENST00000583100 276 ntBASIC20.08■□□□□ 0.8
COL18A1P39060 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL18A1P39060 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
COL18A1P39060 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL18A1P39060 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC20.08■□□□□ 0.8
COL18A1P39060 AD000864.1-201ENST00000624076 2295 ntBASIC20.08■□□□□ 0.8
COL18A1P39060 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
COL18A1P39060 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC20.07■□□□□ 0.8
COL18A1P39060 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 AC026316.1-201ENST00000398900 414 ntBASIC20.07■□□□□ 0.8
COL18A1P39060 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC20.07■□□□□ 0.8
COL18A1P39060 NOC2LP1-201ENST00000450578 752 ntBASIC20.07■□□□□ 0.8
COL18A1P39060 NDUFS6P1-201ENST00000485187 316 ntBASIC20.07■□□□□ 0.8
COL18A1P39060 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC20.07■□□□□ 0.8
COL18A1P39060 IGLV3-15-201ENST00000518356 244 ntBASIC20.07■□□□□ 0.8
COL18A1P39060 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 AL157813.1-201ENST00000612996 587 ntBASIC20.07■□□□□ 0.8
COL18A1P39060 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC20.07■□□□□ 0.8
COL18A1P39060 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.07■□□□□ 0.8
COL18A1P39060 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.07■□□□□ 0.8
COL18A1P39060 AL662844.4-201ENST00000606367 2838 ntBASIC20.07■□□□□ 0.8
COL18A1P39060 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL18A1P39060 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
COL18A1P39060 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC20.07■□□□□ 0.8
COL18A1P39060 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL18A1P39060 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms