Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC18.46■□□□□ 0.54
BRCA1P38398 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC18.46■□□□□ 0.54
BRCA1P38398 EIF5AP2-201ENST00000585668 1047 ntBASIC18.46■□□□□ 0.54
BRCA1P38398 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC18.46■□□□□ 0.54
BRCA1P38398 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
BRCA1P38398 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
BRCA1P38398 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
BRCA1P38398 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.45■□□□□ 0.54
BRCA1P38398 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.45■□□□□ 0.54
BRCA1P38398 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
BRCA1P38398 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
BRCA1P38398 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC18.45■□□□□ 0.54
BRCA1P38398 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.45■□□□□ 0.54
BRCA1P38398 ALG1L6P-201ENST00000515248 758 ntBASIC18.45■□□□□ 0.54
BRCA1P38398 RN7SL596P-201ENST00000582123 288 ntBASIC18.45■□□□□ 0.54
BRCA1P38398 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
BRCA1P38398 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
BRCA1P38398 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
BRCA1P38398 KRT18P9-201ENST00000604826 1300 ntBASIC18.45■□□□□ 0.54
BRCA1P38398 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
BRCA1P38398 AC018629.1-201ENST00000623381 1736 ntBASIC18.45■□□□□ 0.54
BRCA1P38398 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.45■□□□□ 0.54
BRCA1P38398 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
BRCA1P38398 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 AC136759.1-202ENST00000530858 2194 ntBASIC18.44■□□□□ 0.54
BRCA1P38398 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.44■□□□□ 0.54
BRCA1P38398 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
BRCA1P38398 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
BRCA1P38398 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.44■□□□□ 0.54
BRCA1P38398 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
BRCA1P38398 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC18.44■□□□□ 0.54
BRCA1P38398 AC006122.1-201ENST00000493323 440 ntBASIC18.44■□□□□ 0.54
BRCA1P38398 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
BRCA1P38398 ALG3P1-201ENST00000508806 1114 ntBASIC18.44■□□□□ 0.54
BRCA1P38398 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.44■□□□□ 0.54
BRCA1P38398 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
BRCA1P38398 AC138466.5-201ENST00000624002 808 ntBASIC18.44■□□□□ 0.54
BRCA1P38398 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.44■□□□□ 0.54
BRCA1P38398 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
BRCA1P38398 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
BRCA1P38398 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.44■□□□□ 0.54
BRCA1P38398 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
BRCA1P38398 RN7SKP230-201ENST00000365642 335 ntBASIC18.43■□□□□ 0.54
BRCA1P38398 HIST2H2BA-201ENST00000412169 381 ntBASIC18.43■□□□□ 0.54
BRCA1P38398 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.43■□□□□ 0.54
BRCA1P38398 AL645933.1-201ENST00000440087 609 ntBASIC18.43■□□□□ 0.54
BRCA1P38398 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC18.43■□□□□ 0.54
BRCA1P38398 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC18.43■□□□□ 0.54
BRCA1P38398 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.43■□□□□ 0.54
BRCA1P38398 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.43■□□□□ 0.54
BRCA1P38398 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC18.43■□□□□ 0.54
BRCA1P38398 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
BRCA1P38398 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC18.43■□□□□ 0.54
BRCA1P38398 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
BRCA1P38398 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.43■□□□□ 0.54
BRCA1P38398 AL157414.3-201ENST00000624276 1954 ntBASIC18.43■□□□□ 0.54
BRCA1P38398 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BRCA1P38398 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC18.43■□□□□ 0.54
BRCA1P38398 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.43■□□□□ 0.54
BRCA1P38398 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC18.43■□□□□ 0.54
BRCA1P38398 SCARNA21-201ENST00000517026 139 ntBASIC18.43■□□□□ 0.54
BRCA1P38398 NEU3-207ENST00000534628 746 ntTSL 2 BASIC18.43■□□□□ 0.54
BRCA1P38398 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.43■□□□□ 0.54
BRCA1P38398 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC18.43■□□□□ 0.54
BRCA1P38398 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC18.43■□□□□ 0.54
BRCA1P38398 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC18.43■□□□□ 0.54
BRCA1P38398 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC18.43■□□□□ 0.54
BRCA1P38398 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
BRCA1P38398 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
BRCA1P38398 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.43■□□□□ 0.54
BRCA1P38398 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms