Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A5P29400 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A5P29400 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL4A5P29400 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A5P29400 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
COL4A5P29400 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL4A5P29400 FAM90A7P-201ENST00000382628 1395 ntBASIC18.32■□□□□ 0.52
COL4A5P29400 FAM90A23P-201ENST00000400136 1395 ntBASIC18.32■□□□□ 0.52
COL4A5P29400 LINC02447-202ENST00000501888 2146 ntBASIC18.32■□□□□ 0.52
COL4A5P29400 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A5P29400 AC078991.1-201ENST00000437297 610 ntBASIC18.32■□□□□ 0.52
COL4A5P29400 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL4A5P29400 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.32■□□□□ 0.52
COL4A5P29400 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A5P29400 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
COL4A5P29400 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A5P29400 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A5P29400 AC127383.1-201ENST00000444697 1800 ntBASIC18.32■□□□□ 0.52
COL4A5P29400 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A5P29400 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A5P29400 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL4A5P29400 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A5P29400 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
COL4A5P29400 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A5P29400 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A5P29400 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
COL4A5P29400 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A5P29400 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL4A5P29400 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A5P29400 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.31■□□□□ 0.52
COL4A5P29400 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 Z98259.2-201ENST00000641583 609 ntBASIC18.31■□□□□ 0.52
COL4A5P29400 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL4A5P29400 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A5P29400 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.31■□□□□ 0.52
COL4A5P29400 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 TBC1D3J-201ENST00000620719 1426 ntBASIC18.31■□□□□ 0.52
COL4A5P29400 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
COL4A5P29400 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 PUDPP3-201ENST00000445368 636 ntBASIC18.31■□□□□ 0.52
COL4A5P29400 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A5P29400 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A5P29400 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL4A5P29400 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
COL4A5P29400 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A5P29400 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A5P29400 AC244394.1-201ENST00000435000 1665 ntBASIC18.3■□□□□ 0.52
COL4A5P29400 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A5P29400 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A5P29400 CAP2P1-201ENST00000557743 1390 ntBASIC18.3■□□□□ 0.52
COL4A5P29400 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 AL662844.4-201ENST00000606367 2838 ntBASIC18.3■□□□□ 0.52
COL4A5P29400 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A5P29400 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A5P29400 RN7SL8P-201ENST00000461771 266 ntBASIC18.3■□□□□ 0.52
COL4A5P29400 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A5P29400 AC100827.2-201ENST00000563214 1194 ntBASIC18.3■□□□□ 0.52
COL4A5P29400 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC18.3■□□□□ 0.52
COL4A5P29400 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC18.3■□□□□ 0.52
COL4A5P29400 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A5P29400 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A5P29400 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A5P29400 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A5P29400 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A5P29400 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms