Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN4P29074 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 FAM58DP-201ENST00000428076 619 ntBASIC15.81■□□□□ 0.12
PTPN4P29074 SPCS2P4-201ENST00000436160 681 ntBASIC15.81■□□□□ 0.12
PTPN4P29074 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN4P29074 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.81■□□□□ 0.12
PTPN4P29074 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.81■□□□□ 0.12
PTPN4P29074 AC091167.2-201ENST00000579581 588 ntBASIC15.81■□□□□ 0.12
PTPN4P29074 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PTPN4P29074 AC005498.2-205ENST00000593218 784 ntBASIC15.81■□□□□ 0.12
PTPN4P29074 AC020765.3-201ENST00000613051 740 ntBASIC15.81■□□□□ 0.12
PTPN4P29074 AP001059.3-201ENST00000619053 235 ntBASIC15.81■□□□□ 0.12
PTPN4P29074 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.81■□□□□ 0.12
PTPN4P29074 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
PTPN4P29074 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 AC007686.3-201ENST00000619017 3487 ntBASIC15.81■□□□□ 0.12
PTPN4P29074 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PTPN4P29074 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN4P29074 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.8■□□□□ 0.12
PTPN4P29074 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 AL161772.1-201ENST00000610494 4412 ntBASIC15.8■□□□□ 0.12
PTPN4P29074 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PTPN4P29074 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.8■□□□□ 0.12
PTPN4P29074 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.8■□□□□ 0.12
PTPN4P29074 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.8■□□□□ 0.12
PTPN4P29074 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PTPN4P29074 AL512356.2-201ENST00000546955 174 ntBASIC15.8■□□□□ 0.12
PTPN4P29074 KRT8P23-201ENST00000560090 1207 ntBASIC15.8■□□□□ 0.12
PTPN4P29074 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 C18orf15-201ENST00000623680 2534 ntBASIC15.8■□□□□ 0.12
PTPN4P29074 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTPN4P29074 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.8■□□□□ 0.12
PTPN4P29074 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PTPN4P29074 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PTPN4P29074 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
PTPN4P29074 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN4P29074 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN4P29074 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN4P29074 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN4P29074 RBPMS2P1-201ENST00000437762 623 ntBASIC15.79■□□□□ 0.12
PTPN4P29074 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 RNA5SP421-201ENST00000516864 134 ntBASIC15.79■□□□□ 0.12
PTPN4P29074 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.79■□□□□ 0.12
PTPN4P29074 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.79■□□□□ 0.12
PTPN4P29074 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms