Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.83■□□□□ 0.45
SMARCA1P28370 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.83■□□□□ 0.45
SMARCA1P28370 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
SMARCA1P28370 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SMARCA1P28370 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SMARCA1P28370 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
SMARCA1P28370 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.83■□□□□ 0.44
SMARCA1P28370 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
SMARCA1P28370 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SMARCA1P28370 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.83■□□□□ 0.44
SMARCA1P28370 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.83■□□□□ 0.44
SMARCA1P28370 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.83■□□□□ 0.44
SMARCA1P28370 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.83■□□□□ 0.44
SMARCA1P28370 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 AC114812.1-204ENST00000449669 728 ntBASIC17.83■□□□□ 0.44
SMARCA1P28370 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SMARCA1P28370 AC022137.2-201ENST00000503482 481 ntBASIC17.83■□□□□ 0.44
SMARCA1P28370 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.83■□□□□ 0.44
SMARCA1P28370 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.83■□□□□ 0.44
SMARCA1P28370 AC132938.2-201ENST00000579188 680 ntBASIC17.83■□□□□ 0.44
SMARCA1P28370 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 AL591163.1-201ENST00000641757 987 ntBASIC17.83■□□□□ 0.44
SMARCA1P28370 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.83■□□□□ 0.44
SMARCA1P28370 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.83■□□□□ 0.44
SMARCA1P28370 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
SMARCA1P28370 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SMARCA1P28370 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.83■□□□□ 0.44
SMARCA1P28370 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.83■□□□□ 0.44
SMARCA1P28370 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMARCA1P28370 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.82■□□□□ 0.44
SMARCA1P28370 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.82■□□□□ 0.44
SMARCA1P28370 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.82■□□□□ 0.44
SMARCA1P28370 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SMARCA1P28370 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
SMARCA1P28370 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.82■□□□□ 0.44
SMARCA1P28370 AC093433.1-201ENST00000458048 571 ntBASIC17.82■□□□□ 0.44
SMARCA1P28370 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.82■□□□□ 0.44
SMARCA1P28370 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SMARCA1P28370 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.82■□□□□ 0.44
SMARCA1P28370 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SMARCA1P28370 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SMARCA1P28370 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 AC106886.1-201ENST00000568660 600 ntBASIC17.82■□□□□ 0.44
SMARCA1P28370 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.82■□□□□ 0.44
SMARCA1P28370 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.82■□□□□ 0.44
SMARCA1P28370 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.82■□□□□ 0.44
SMARCA1P28370 C18orf15-201ENST00000623680 2534 ntBASIC17.82■□□□□ 0.44
SMARCA1P28370 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.82■□□□□ 0.44
SMARCA1P28370 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SMARCA1P28370 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SMARCA1P28370 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SMARCA1P28370 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.82■□□□□ 0.44
SMARCA1P28370 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SMARCA1P28370 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMARCA1P28370 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
SMARCA1P28370 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.81■□□□□ 0.44
SMARCA1P28370 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.81■□□□□ 0.44
SMARCA1P28370 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SMARCA1P28370 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.81■□□□□ 0.44
SMARCA1P28370 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.81■□□□□ 0.44
SMARCA1P28370 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.81■□□□□ 0.44
SMARCA1P28370 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SMARCA1P28370 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms