Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
COL5A1P20908 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.71□□□□□ -0.06
COL5A1P20908 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC14.71□□□□□ -0.06
COL5A1P20908 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.71□□□□□ -0.06
COL5A1P20908 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.71□□□□□ -0.06
COL5A1P20908 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC14.71□□□□□ -0.06
COL5A1P20908 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.71□□□□□ -0.06
COL5A1P20908 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.71□□□□□ -0.06
COL5A1P20908 MBP-227ENST00000526111 581 ntTSL 4 BASIC14.71□□□□□ -0.06
COL5A1P20908 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC14.71□□□□□ -0.06
COL5A1P20908 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.71□□□□□ -0.06
COL5A1P20908 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.06
COL5A1P20908 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.71□□□□□ -0.06
COL5A1P20908 FADS2-215ENST00000574708 385 ntTSL 3 BASIC14.71□□□□□ -0.06
COL5A1P20908 MIR4783-201ENST00000580343 82 ntBASIC14.71□□□□□ -0.06
COL5A1P20908 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 AC138466.3-201ENST00000619983 221 ntBASIC14.71□□□□□ -0.06
COL5A1P20908 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.71□□□□□ -0.06
COL5A1P20908 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
COL5A1P20908 CLUHP2-201ENST00000426660 1303 ntBASIC14.7□□□□□ -0.06
COL5A1P20908 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC14.7□□□□□ -0.06
COL5A1P20908 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 RN7SKP175-201ENST00000408472 289 ntBASIC14.7□□□□□ -0.06
COL5A1P20908 ACTG1P2-201ENST00000415776 1125 ntBASIC14.7□□□□□ -0.06
COL5A1P20908 ACTG1P11-201ENST00000425411 1125 ntBASIC14.7□□□□□ -0.06
COL5A1P20908 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.7□□□□□ -0.06
COL5A1P20908 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.7□□□□□ -0.06
COL5A1P20908 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.7□□□□□ -0.06
COL5A1P20908 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.7□□□□□ -0.06
COL5A1P20908 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
COL5A1P20908 BNIP3P13-201ENST00000599968 566 ntBASIC14.7□□□□□ -0.06
COL5A1P20908 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC14.7□□□□□ -0.06
COL5A1P20908 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.7□□□□□ -0.06
COL5A1P20908 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL5A1P20908 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 KRT8P4-201ENST00000509735 1454 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 DPM3-202ENST00000368399 517 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 MPV17-204ENST00000399052 749 ntTSL 4 BASIC14.69□□□□□ -0.06
COL5A1P20908 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC14.69□□□□□ -0.06
COL5A1P20908 AC024681.1-201ENST00000521917 487 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC14.69□□□□□ -0.06
COL5A1P20908 AF254983.2-201ENST00000612331 135 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC14.69□□□□□ -0.06
COL5A1P20908 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.69□□□□□ -0.06
COL5A1P20908 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.69□□□□□ -0.06
COL5A1P20908 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.69□□□□□ -0.06
COL5A1P20908 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
COL5A1P20908 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL5A1P20908 AC005740.2-201ENST00000511085 419 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 AL161670.2-201ENST00000557650 1227 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.69□□□□□ -0.06
COL5A1P20908 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms