Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SCN5A-202ENST00000333535 8456 ntAPPRIS P5 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 AL353732.1-201ENST00000569618 1459 ntBASIC12.68□□□□□ -0.38
HMGB3O15347 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
HMGB3O15347 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 AL596275.1-201ENST00000423464 877 ntBASIC12.68□□□□□ -0.38
HMGB3O15347 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC12.68□□□□□ -0.38
HMGB3O15347 AP001350.2-201ENST00000625104 1094 ntBASIC12.68□□□□□ -0.38
HMGB3O15347 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC12.68□□□□□ -0.38
HMGB3O15347 CARMN-210ENST00000602964 8398 ntTSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
HMGB3O15347 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
HMGB3O15347 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 C8orf49-201ENST00000525043 1968 ntBASIC12.68□□□□□ -0.38
HMGB3O15347 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 ZKSCAN1-205ENST00000535170 8758 ntTSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
HMGB3O15347 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC12.68□□□□□ -0.38
HMGB3O15347 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 POLE-201ENST00000320574 7840 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC12.67□□□□□ -0.38
HMGB3O15347 SLC9A3P2-201ENST00000447821 2021 ntBASIC12.67□□□□□ -0.38
HMGB3O15347 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.67□□□□□ -0.38
HMGB3O15347 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.67□□□□□ -0.38
HMGB3O15347 CACNA1F-201ENST00000323022 6037 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 AC013726.1-201ENST00000563747 2285 ntBASIC12.67□□□□□ -0.38
HMGB3O15347 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
HMGB3O15347 OR2B11-202ENST00000641149 6414 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
HMGB3O15347 ZNF629-201ENST00000262525 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
HMGB3O15347 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC12.67□□□□□ -0.38
HMGB3O15347 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 HAUS4P1-201ENST00000406739 1145 ntBASIC12.67□□□□□ -0.38
HMGB3O15347 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 STARD13-205ENST00000439831 945 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 RBSN-204ENST00000449050 903 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 TOB2P1-201ENST00000469761 992 ntBASIC12.67□□□□□ -0.38
HMGB3O15347 SLC25A6P2-201ENST00000497974 877 ntBASIC12.67□□□□□ -0.38
HMGB3O15347 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC12.67□□□□□ -0.38
HMGB3O15347 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC12.67□□□□□ -0.38
HMGB3O15347 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC12.67□□□□□ -0.38
HMGB3O15347 GZMM-202ENST00000592501 941 ntTSL 3 BASIC12.67□□□□□ -0.38
HMGB3O15347 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 AL121672.3-201ENST00000608644 468 ntBASIC12.67□□□□□ -0.38
HMGB3O15347 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms