Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 AL513210.1-201ENST00000629608 234 ntBASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RHBDD3Q9Y3P4 BNIP3P1-202ENST00000550043 1585 ntBASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 AL136379.1-201ENST00000623471 2642 ntBASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 STOM-202ENST00000347359 870 ntTSL 2 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 RPSAP43-201ENST00000402237 625 ntBASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RHBDD3Q9Y3P4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 AL136982.4-201ENST00000437689 1740 ntBASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 AC004461.1-201ENST00000412461 403 ntBASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 UPF3AP3-201ENST00000420996 769 ntBASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 RARRES2P9-201ENST00000565168 469 ntBASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
RHBDD3Q9Y3P4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms