Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 METTL21AP1-201ENST00000438852 635 ntBASIC12.72□□□□□ -0.37
FOXA2Q9Y261 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 PHKG1P2-201ENST00000457537 863 ntBASIC12.72□□□□□ -0.37
FOXA2Q9Y261 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 AL512356.2-201ENST00000546955 174 ntBASIC12.72□□□□□ -0.37
FOXA2Q9Y261 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 AC003101.2-201ENST00000612557 442 ntBASIC12.72□□□□□ -0.37
FOXA2Q9Y261 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 RAB34-224ENST00000636513 888 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 CYP4F24P-201ENST00000586049 1580 ntBASIC12.72□□□□□ -0.37
FOXA2Q9Y261 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
FOXA2Q9Y261 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 AL365209.1-201ENST00000624418 6473 ntBASIC12.71□□□□□ -0.37
FOXA2Q9Y261 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 LBH-203ENST00000404397 543 ntTSL 4 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA2Q9Y261 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms