Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 AL033527.5-201ENST00000641382 801 ntBASIC15.7■□□□□ 0.1
LHX3Q9UBR4 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 TMBIM7P-203ENST00000641617 1718 ntBASIC15.7■□□□□ 0.1
LHX3Q9UBR4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 AC112693.3-201ENST00000624819 1983 ntBASIC15.69■□□□□ 0.1
LHX3Q9UBR4 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 SOCS2P1-201ENST00000417727 557 ntBASIC15.69■□□□□ 0.1
LHX3Q9UBR4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
LHX3Q9UBR4 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 AL162726.2-201ENST00000438986 1017 ntBASIC15.68■□□□□ 0.1
LHX3Q9UBR4 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 GAPDHP21-201ENST00000450301 1010 ntBASIC15.68■□□□□ 0.1
LHX3Q9UBR4 AC093813.1-201ENST00000605066 256 ntBASIC15.68■□□□□ 0.1
LHX3Q9UBR4 CU634019.7-201ENST00000624153 1185 ntBASIC15.68■□□□□ 0.1
LHX3Q9UBR4 FP236241.2-201ENST00000624906 1185 ntBASIC15.68■□□□□ 0.1
LHX3Q9UBR4 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LHX3Q9UBR4 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
LHX3Q9UBR4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms