Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 AC004461.2-201ENST00000629517 803 ntBASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CUEDC1Q9NWM3 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 ARSEP1-201ENST00000420443 635 ntBASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 GPR53P-205ENST00000457298 1084 ntBASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 MIR6799-201ENST00000620297 69 ntBASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 AC126755.1-201ENST00000525846 6405 ntBASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CUEDC1Q9NWM3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
CUEDC1Q9NWM3 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms