Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.95■□□□□ 0.62
RPAP1Q9BWH6 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.94■□□□□ 0.62
RPAP1Q9BWH6 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 KRT43P-201ENST00000434019 910 ntBASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 CROCCP4-201ENST00000457096 498 ntBASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 AC092658.1-201ENST00000505836 891 ntBASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 MIR6775-201ENST00000617557 69 ntBASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.93■□□□□ 0.62
RPAP1Q9BWH6 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms