Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 AL691403.2-201ENST00000618460 490 ntBASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 AC055717.3-201ENST00000622967 595 ntBASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 AC127383.1-201ENST00000444697 1800 ntBASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM56Q9BRZ2 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 FAM58DP-201ENST00000428076 619 ntBASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 AL592309.1-201ENST00000443127 649 ntBASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 IGHV3-62-201ENST00000520057 340 ntBASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 AC010327.4-202ENST00000591484 748 ntBASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM56Q9BRZ2 CICP24-201ENST00000605464 2705 ntBASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms