Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.92■□□□□ 0.46
USP28Q96RU2 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.92■□□□□ 0.46
USP28Q96RU2 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 AC211486.1-202ENST00000416371 468 ntBASIC17.92■□□□□ 0.46
USP28Q96RU2 AL080243.2-201ENST00000418783 582 ntBASIC17.92■□□□□ 0.46
USP28Q96RU2 KRT18P64-201ENST00000434946 1219 ntBASIC17.92■□□□□ 0.46
USP28Q96RU2 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.92■□□□□ 0.46
USP28Q96RU2 AC211476.1-201ENST00000503899 468 ntBASIC17.92■□□□□ 0.46
USP28Q96RU2 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.92■□□□□ 0.46
USP28Q96RU2 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.92■□□□□ 0.46
USP28Q96RU2 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.92■□□□□ 0.46
USP28Q96RU2 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.92■□□□□ 0.46
USP28Q96RU2 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.92■□□□□ 0.46
USP28Q96RU2 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USP28Q96RU2 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.92■□□□□ 0.46
USP28Q96RU2 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.92■□□□□ 0.46
USP28Q96RU2 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
USP28Q96RU2 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USP28Q96RU2 ZBED1P1-201ENST00000502364 1930 ntBASIC17.92■□□□□ 0.46
USP28Q96RU2 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP28Q96RU2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USP28Q96RU2 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
USP28Q96RU2 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.91■□□□□ 0.46
USP28Q96RU2 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
USP28Q96RU2 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
USP28Q96RU2 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
USP28Q96RU2 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.91■□□□□ 0.46
USP28Q96RU2 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.91■□□□□ 0.46
USP28Q96RU2 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
USP28Q96RU2 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.91■□□□□ 0.46
USP28Q96RU2 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.91■□□□□ 0.46
USP28Q96RU2 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 AC027612.4-201ENST00000605371 583 ntBASIC17.91■□□□□ 0.46
USP28Q96RU2 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
USP28Q96RU2 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
USP28Q96RU2 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
USP28Q96RU2 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
USP28Q96RU2 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP28Q96RU2 FAM45BP-202ENST00000592932 1624 ntBASIC17.9■□□□□ 0.46
USP28Q96RU2 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
USP28Q96RU2 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.9■□□□□ 0.46
USP28Q96RU2 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP28Q96RU2 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
USP28Q96RU2 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms