Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 TCAF2P1-201ENST00000291129 2421 ntBASIC11.8□□□□□ -0.52
LINC00477Q96M19 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 RPL5P21-201ENST00000404620 815 ntBASIC11.8□□□□□ -0.52
LINC00477Q96M19 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 SPCS2P4-201ENST00000436160 681 ntBASIC11.8□□□□□ -0.52
LINC00477Q96M19 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 FXR1-221ENST00000491674 365 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 AC079140.1-201ENST00000508039 487 ntBASIC11.8□□□□□ -0.52
LINC00477Q96M19 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 COQ9-214ENST00000567933 882 ntTSL 3 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 CITED2-204ENST00000618718 901 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 AC055717.3-201ENST00000622967 595 ntBASIC11.8□□□□□ -0.52
LINC00477Q96M19 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 UXT-AS1-201ENST00000590504 1525 ntBASIC11.8□□□□□ -0.52
LINC00477Q96M19 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 STK33-217ENST00000534493 1895 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 AC026396.1-201ENST00000419388 421 ntBASIC11.79□□□□□ -0.52
LINC00477Q96M19 MCCD1P2-201ENST00000423228 335 ntBASIC11.79□□□□□ -0.52
LINC00477Q96M19 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 AC084121.4-201ENST00000641598 221 ntBASIC11.79□□□□□ -0.52
LINC00477Q96M19 AF228730.8-201ENST00000642140 221 ntBASIC11.79□□□□□ -0.52
LINC00477Q96M19 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
LINC00477Q96M19 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC11.79□□□□□ -0.52
LINC00477Q96M19 MECR-202ENST00000373791 2416 ntTSL 2 BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms