Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AC007326.2-201ENST00000624224 7579 ntBASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 AC126177.1-201ENST00000547829 2218 ntBASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SYNE3Q6ZMZ3 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 TSSK5P-201ENST00000423978 907 ntBASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 ZNF890P-202ENST00000530367 1156 ntBASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC044860.1-202ENST00000559481 777 ntBASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC104640.1-201ENST00000562617 2109 ntBASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AL161772.1-201ENST00000610494 4412 ntBASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AC073347.1-201ENST00000421633 2643 ntBASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SYNE3Q6ZMZ3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 AC022532.1-201ENST00000624563 1728 ntBASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 AC005498.2-205ENST00000593218 784 ntBASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 AL390955.2-201ENST00000603032 514 ntBASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.47■□□□□ 0.55
SYNE3Q6ZMZ3 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms