Protein–RNA interactions for Protein: P68431

HIST1H3A, Histone H3.1, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H3AP68431 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HIST1H3AP68431 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.72□□□□□ -0.21
HIST1H3AP68431 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HIST1H3AP68431 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.72□□□□□ -0.21
HIST1H3AP68431 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.72□□□□□ -0.21
HIST1H3AP68431 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
HIST1H3AP68431 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 AC087499.5-201ENST00000452760 1342 ntBASIC13.71□□□□□ -0.21
HIST1H3AP68431 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
HIST1H3AP68431 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.71□□□□□ -0.21
HIST1H3AP68431 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 TOMM22P5-201ENST00000416399 439 ntBASIC13.71□□□□□ -0.21
HIST1H3AP68431 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.71□□□□□ -0.21
HIST1H3AP68431 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 AC092580.3-201ENST00000430932 139 ntBASIC13.71□□□□□ -0.21
HIST1H3AP68431 RN7SL618P-201ENST00000477850 296 ntBASIC13.71□□□□□ -0.21
HIST1H3AP68431 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.71□□□□□ -0.21
HIST1H3AP68431 AC023824.1-201ENST00000562945 2975 ntBASIC13.71□□□□□ -0.21
HIST1H3AP68431 AC015910.1-201ENST00000579400 975 ntBASIC13.71□□□□□ -0.21
HIST1H3AP68431 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.71□□□□□ -0.21
HIST1H3AP68431 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 AC074044.1-201ENST00000609673 707 ntBASIC13.71□□□□□ -0.21
HIST1H3AP68431 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
HIST1H3AP68431 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIST1H3AP68431 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.71□□□□□ -0.22
HIST1H3AP68431 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIST1H3AP68431 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.71□□□□□ -0.22
HIST1H3AP68431 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIST1H3AP68431 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIST1H3AP68431 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.71□□□□□ -0.22
HIST1H3AP68431 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
HIST1H3AP68431 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIST1H3AP68431 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
HIST1H3AP68431 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIST1H3AP68431 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIST1H3AP68431 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
HIST1H3AP68431 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
HIST1H3AP68431 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HIST1H3AP68431 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
HIST1H3AP68431 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.71□□□□□ -0.22
HIST1H3AP68431 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 AC015922.1-201ENST00000421102 1152 ntBASIC13.7□□□□□ -0.22
HIST1H3AP68431 KRT18P64-201ENST00000434946 1219 ntBASIC13.7□□□□□ -0.22
HIST1H3AP68431 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HIST1H3AP68431 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.7□□□□□ -0.22
HIST1H3AP68431 AC097493.3-201ENST00000509725 367 ntBASIC13.7□□□□□ -0.22
HIST1H3AP68431 SDHAP3-202ENST00000515467 728 ntBASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms