Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
LIM2P55344 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.88□□□□□ -0.03
LIM2P55344 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 AC015922.1-201ENST00000421102 1152 ntBASIC14.88□□□□□ -0.03
LIM2P55344 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.88□□□□□ -0.03
LIM2P55344 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.88□□□□□ -0.03
LIM2P55344 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.88□□□□□ -0.03
LIM2P55344 SPCS2P1-201ENST00000561636 679 ntBASIC14.88□□□□□ -0.03
LIM2P55344 AC011467.4-201ENST00000594891 528 ntBASIC14.88□□□□□ -0.03
LIM2P55344 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.88□□□□□ -0.03
LIM2P55344 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.88□□□□□ -0.03
LIM2P55344 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.88□□□□□ -0.03
LIM2P55344 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.88□□□□□ -0.03
LIM2P55344 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.87□□□□□ -0.03
LIM2P55344 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.87□□□□□ -0.03
LIM2P55344 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.87□□□□□ -0.03
LIM2P55344 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
LIM2P55344 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.87□□□□□ -0.03
LIM2P55344 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.87□□□□□ -0.03
LIM2P55344 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 BCRP1-201ENST00000444246 691 ntBASIC14.87□□□□□ -0.03
LIM2P55344 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 SPDYE18-201ENST00000510091 1050 ntBASIC14.87□□□□□ -0.03
LIM2P55344 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.87□□□□□ -0.03
LIM2P55344 TIMM17BP1-201ENST00000545713 516 ntBASIC14.87□□□□□ -0.03
LIM2P55344 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
LIM2P55344 AC092337.1-201ENST00000568699 1129 ntBASIC14.87□□□□□ -0.03
LIM2P55344 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.87□□□□□ -0.03
LIM2P55344 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.87□□□□□ -0.03
LIM2P55344 AL096865.1-201ENST00000606796 927 ntBASIC14.87□□□□□ -0.03
LIM2P55344 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 AC009090.5-201ENST00000624886 2285 ntBASIC14.87□□□□□ -0.03
LIM2P55344 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
LIM2P55344 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.87□□□□□ -0.03
LIM2P55344 AC138035.3-201ENST00000622706 2791 ntBASIC14.87□□□□□ -0.03
LIM2P55344 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.87□□□□□ -0.03
LIM2P55344 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.87□□□□□ -0.03
LIM2P55344 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.87□□□□□ -0.03
LIM2P55344 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.87□□□□□ -0.03
LIM2P55344 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LIM2P55344 AC087481.3-201ENST00000602886 1894 ntBASIC14.86□□□□□ -0.03
LIM2P55344 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.86□□□□□ -0.03
LIM2P55344 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LIM2P55344 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.86□□□□□ -0.03
LIM2P55344 AC090616.6-203ENST00000579186 1945 ntBASIC14.86□□□□□ -0.03
LIM2P55344 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms