Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.13■□□□□ 0.81
COL18A1P39060 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.13■□□□□ 0.81
COL18A1P39060 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
COL18A1P39060 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 LBH-202ENST00000401506 485 ntTSL 3 BASIC20.13■□□□□ 0.81
COL18A1P39060 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
COL18A1P39060 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC20.13■□□□□ 0.81
COL18A1P39060 IRF3-215ENST00000596822 823 ntTSL 3 BASIC20.13■□□□□ 0.81
COL18A1P39060 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC20.13■□□□□ 0.81
COL18A1P39060 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
COL18A1P39060 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.12■□□□□ 0.81
COL18A1P39060 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC20.12■□□□□ 0.81
COL18A1P39060 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
COL18A1P39060 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC20.12■□□□□ 0.81
COL18A1P39060 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC20.12■□□□□ 0.81
COL18A1P39060 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
COL18A1P39060 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC20.12■□□□□ 0.81
COL18A1P39060 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
COL18A1P39060 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC20.12■□□□□ 0.81
COL18A1P39060 MVK-214ENST00000629016 1591 ntTSL 5 BASIC20.12■□□□□ 0.81
COL18A1P39060 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.12■□□□□ 0.81
COL18A1P39060 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC20.12■□□□□ 0.81
COL18A1P39060 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC20.12■□□□□ 0.81
COL18A1P39060 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL18A1P39060 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL18A1P39060 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC20.11■□□□□ 0.81
COL18A1P39060 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.11■□□□□ 0.81
COL18A1P39060 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC20.11■□□□□ 0.81
COL18A1P39060 AL355334.1-201ENST00000417713 215 ntBASIC20.11■□□□□ 0.81
COL18A1P39060 AC019193.1-201ENST00000506678 823 ntBASIC20.11■□□□□ 0.81
COL18A1P39060 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 AC138894.2-201ENST00000602838 371 ntBASIC20.11■□□□□ 0.81
COL18A1P39060 AC006453.1-201ENST00000636037 1257 ntBASIC20.11■□□□□ 0.81
COL18A1P39060 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
COL18A1P39060 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC20.11■□□□□ 0.81
COL18A1P39060 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.11■□□□□ 0.81
COL18A1P39060 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL18A1P39060 MBLAC2-202ENST00000514906 1936 ntBASIC20.11■□□□□ 0.81
COL18A1P39060 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL18A1P39060 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 RPL18P13-201ENST00000478088 569 ntBASIC20.11■□□□□ 0.81
COL18A1P39060 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC20.11■□□□□ 0.81
COL18A1P39060 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.11■□□□□ 0.81
COL18A1P39060 RTN3P1-201ENST00000536295 711 ntBASIC20.11■□□□□ 0.81
COL18A1P39060 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC20.11■□□□□ 0.81
COL18A1P39060 STUB1-204ENST00000564370 875 ntTSL 2 BASIC20.11■□□□□ 0.81
COL18A1P39060 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC20.11■□□□□ 0.81
COL18A1P39060 WDR7-208ENST00000589935 544 ntTSL 4 BASIC20.11■□□□□ 0.81
COL18A1P39060 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC20.11■□□□□ 0.81
COL18A1P39060 AL136295.7-201ENST00000619226 1200 ntBASIC20.11■□□□□ 0.81
COL18A1P39060 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL18A1P39060 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL18A1P39060 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.1■□□□□ 0.81
COL18A1P39060 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC20.1■□□□□ 0.81
COL18A1P39060 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC20.1■□□□□ 0.81
COL18A1P39060 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
COL18A1P39060 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.1■□□□□ 0.81
COL18A1P39060 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL18A1P39060 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 AK6-201ENST00000380818 1183 ntTSL 2 BASIC20.1■□□□□ 0.81
COL18A1P39060 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL18A1P39060 SERF2-209ENST00000409646 559 ntTSL 4 BASIC20.1■□□□□ 0.81
COL18A1P39060 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC20.1■□□□□ 0.81
COL18A1P39060 LY6E-208ENST00000520531 490 ntTSL 2 BASIC20.1■□□□□ 0.81
COL18A1P39060 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms