Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 IL9RP3-201ENST00000442856 1674 ntBASIC18.49■□□□□ 0.55
BRCA1P38398 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC18.49■□□□□ 0.55
BRCA1P38398 AC006058.4-201ENST00000624016 1670 ntBASIC18.49■□□□□ 0.55
BRCA1P38398 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
BRCA1P38398 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
BRCA1P38398 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 NCR3-202ENST00000376071 541 ntTSL 5 BASIC18.48■□□□□ 0.55
BRCA1P38398 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.48■□□□□ 0.55
BRCA1P38398 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 AC008723.1-201ENST00000506922 207 ntBASIC18.48■□□□□ 0.55
BRCA1P38398 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC18.48■□□□□ 0.55
BRCA1P38398 AP003392.6-201ENST00000607709 325 ntBASIC18.48■□□□□ 0.55
BRCA1P38398 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
BRCA1P38398 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
BRCA1P38398 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
BRCA1P38398 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC18.48■□□□□ 0.55
BRCA1P38398 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
BRCA1P38398 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 RNA5SP359-201ENST00000364838 113 ntBASIC18.48■□□□□ 0.55
BRCA1P38398 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
BRCA1P38398 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
BRCA1P38398 AC103810.10-201ENST00000606504 343 ntBASIC18.48■□□□□ 0.55
BRCA1P38398 FO393412.1-201ENST00000619841 382 ntBASIC18.48■□□□□ 0.55
BRCA1P38398 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
BRCA1P38398 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
BRCA1P38398 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 MTHFR-217ENST00000641820 1569 ntBASIC18.47■□□□□ 0.55
BRCA1P38398 AL138725.1-201ENST00000407347 1314 ntBASIC18.47■□□□□ 0.55
BRCA1P38398 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
BRCA1P38398 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.47■□□□□ 0.55
BRCA1P38398 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
BRCA1P38398 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC18.47■□□□□ 0.55
BRCA1P38398 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC18.47■□□□□ 0.55
BRCA1P38398 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.47■□□□□ 0.55
BRCA1P38398 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.47■□□□□ 0.55
BRCA1P38398 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
BRCA1P38398 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 CYP4F23P-201ENST00000593402 1579 ntBASIC18.47■□□□□ 0.55
BRCA1P38398 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BRCA1P38398 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BRCA1P38398 AC092171.3-201ENST00000610122 2651 ntBASIC18.46■□□□□ 0.55
BRCA1P38398 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.46■□□□□ 0.55
BRCA1P38398 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
BRCA1P38398 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC18.46■□□□□ 0.55
BRCA1P38398 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
BRCA1P38398 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.46■□□□□ 0.55
BRCA1P38398 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.46■□□□□ 0.55
BRCA1P38398 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC18.46■□□□□ 0.55
BRCA1P38398 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC18.46■□□□□ 0.55
BRCA1P38398 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC18.46■□□□□ 0.55
BRCA1P38398 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18.46■□□□□ 0.55
BRCA1P38398 AC244250.3-201ENST00000620749 366 ntBASIC18.46■□□□□ 0.55
BRCA1P38398 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
BRCA1P38398 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BRCA1P38398 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BRCA1P38398 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC18.46■□□□□ 0.55
BRCA1P38398 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
BRCA1P38398 SERF2-209ENST00000409646 559 ntTSL 4 BASIC18.46■□□□□ 0.54
BRCA1P38398 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.46■□□□□ 0.54
BRCA1P38398 FAU-202ENST00000434372 533 ntTSL 2 BASIC18.46■□□□□ 0.54
BRCA1P38398 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.54
BRCA1P38398 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC18.46■□□□□ 0.54
BRCA1P38398 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.46■□□□□ 0.54
BRCA1P38398 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.54
BRCA1P38398 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms