Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 AC026316.1-201ENST00000398900 414 ntBASIC18.35■□□□□ 0.53
COL4A5P29400 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A5P29400 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.35■□□□□ 0.53
COL4A5P29400 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.35■□□□□ 0.53
COL4A5P29400 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.35■□□□□ 0.53
COL4A5P29400 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.35■□□□□ 0.53
COL4A5P29400 AL132994.2-201ENST00000603120 687 ntBASIC18.35■□□□□ 0.53
COL4A5P29400 AC007718.1-201ENST00000621078 280 ntBASIC18.35■□□□□ 0.53
COL4A5P29400 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A5P29400 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
COL4A5P29400 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A5P29400 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 FKBP4P6-201ENST00000457486 1332 ntBASIC18.35■□□□□ 0.53
COL4A5P29400 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL4A5P29400 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL4A5P29400 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A5P29400 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A5P29400 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A5P29400 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 RN7SKP214-201ENST00000364208 315 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL4A5P29400 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A5P29400 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A5P29400 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.34■□□□□ 0.53
COL4A5P29400 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 AC006335.1-201ENST00000445200 547 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 CTBP2P4-201ENST00000513884 920 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 HNRNPA1P36-201ENST00000521313 955 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 AC132192.2-201ENST00000596206 1147 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 AC087045.2-201ENST00000606279 1003 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 COX6A1P2-201ENST00000620597 330 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 AC002472.3-201ENST00000640124 621 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A5P29400 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A5P29400 SHC1P1-201ENST00000425230 1745 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL4A5P29400 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
COL4A5P29400 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 OR2K2-202ENST00000374428 1038 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL4A5P29400 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A5P29400 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.34■□□□□ 0.53
COL4A5P29400 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
COL4A5P29400 AC103691.2-201ENST00000618824 433 ntBASIC18.34■□□□□ 0.53
COL4A5P29400 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A5P29400 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A5P29400 AC011840.2-201ENST00000563063 1520 ntBASIC18.33■□□□□ 0.53
COL4A5P29400 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A5P29400 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
COL4A5P29400 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A5P29400 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A5P29400 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A5P29400 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.53
COL4A5P29400 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
COL4A5P29400 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A5P29400 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
COL4A5P29400 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
COL4A5P29400 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.33■□□□□ 0.52
COL4A5P29400 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A5P29400 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A5P29400 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.33■□□□□ 0.52
COL4A5P29400 AC138696.2-201ENST00000607376 223 ntBASIC18.33■□□□□ 0.52
COL4A5P29400 AC092171.5-201ENST00000608012 942 ntBASIC18.33■□□□□ 0.52
COL4A5P29400 MIR6842-201ENST00000612539 65 ntBASIC18.33■□□□□ 0.52
COL4A5P29400 MIR6756-201ENST00000616240 63 ntBASIC18.33■□□□□ 0.52
COL4A5P29400 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
COL4A5P29400 MBLAC2-202ENST00000514906 1936 ntBASIC18.33■□□□□ 0.52
COL4A5P29400 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A5P29400 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms