Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC15.99■□□□□ 0.15
COL9A1P20849 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC15.99■□□□□ 0.15
COL9A1P20849 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC15.99■□□□□ 0.15
COL9A1P20849 AC011742.3-201ENST00000439053 820 ntBASIC15.99■□□□□ 0.15
COL9A1P20849 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC15.99■□□□□ 0.15
COL9A1P20849 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.99■□□□□ 0.15
COL9A1P20849 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.99■□□□□ 0.15
COL9A1P20849 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
COL9A1P20849 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.99■□□□□ 0.15
COL9A1P20849 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC15.99■□□□□ 0.15
COL9A1P20849 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.99■□□□□ 0.15
COL9A1P20849 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.99■□□□□ 0.15
COL9A1P20849 AL109620.1-201ENST00000618738 1197 ntBASIC15.99■□□□□ 0.15
COL9A1P20849 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL9A1P20849 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL9A1P20849 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL9A1P20849 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL9A1P20849 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL9A1P20849 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.99■□□□□ 0.15
COL9A1P20849 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.99■□□□□ 0.15
COL9A1P20849 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 ME2P1-201ENST00000426028 1970 ntBASIC15.98■□□□□ 0.15
COL9A1P20849 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
COL9A1P20849 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.98■□□□□ 0.15
COL9A1P20849 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
COL9A1P20849 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC15.98■□□□□ 0.15
COL9A1P20849 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.98■□□□□ 0.15
COL9A1P20849 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.98■□□□□ 0.15
COL9A1P20849 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC15.98■□□□□ 0.15
COL9A1P20849 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 PFN2-206ENST00000461930 606 ntTSL 4 BASIC15.98■□□□□ 0.15
COL9A1P20849 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC15.98■□□□□ 0.15
COL9A1P20849 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.98■□□□□ 0.15
COL9A1P20849 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 MIR4649-201ENST00000582839 64 ntBASIC15.98■□□□□ 0.15
COL9A1P20849 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.98■□□□□ 0.15
COL9A1P20849 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL9A1P20849 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL9A1P20849 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
COL9A1P20849 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL9A1P20849 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.98■□□□□ 0.15
COL9A1P20849 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.98■□□□□ 0.15
COL9A1P20849 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.97■□□□□ 0.15
COL9A1P20849 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.97■□□□□ 0.15
COL9A1P20849 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.97■□□□□ 0.15
COL9A1P20849 AC011676.5-201ENST00000624864 2660 ntBASIC15.97■□□□□ 0.15
COL9A1P20849 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
COL9A1P20849 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.97■□□□□ 0.15
COL9A1P20849 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.97■□□□□ 0.15
COL9A1P20849 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
COL9A1P20849 HNRNPA1P58-201ENST00000403629 610 ntBASIC15.97■□□□□ 0.15
COL9A1P20849 TOMM22P5-201ENST00000416399 439 ntBASIC15.97■□□□□ 0.15
COL9A1P20849 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 HLA-DPA2-205ENST00000433582 733 ntBASIC15.97■□□□□ 0.15
COL9A1P20849 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.97■□□□□ 0.15
COL9A1P20849 PHKG1P2-201ENST00000457537 863 ntBASIC15.97■□□□□ 0.15
COL9A1P20849 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC15.97■□□□□ 0.15
COL9A1P20849 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL9A1P20849 ETFRF1-207ENST00000556351 838 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms