Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 AP001267.2-201ENST00000532619 2086 ntBASIC12.22□□□□□ -0.45
CXCL1P09341 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC12.22□□□□□ -0.45
CXCL1P09341 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC12.22□□□□□ -0.45
CXCL1P09341 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 AC011477.6-201ENST00000604980 1927 ntBASIC12.22□□□□□ -0.45
CXCL1P09341 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
CXCL1P09341 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC12.22□□□□□ -0.45
CXCL1P09341 KRT18P57-201ENST00000443599 1254 ntBASIC12.22□□□□□ -0.45
CXCL1P09341 PAWRP1-201ENST00000451083 565 ntBASIC12.22□□□□□ -0.45
CXCL1P09341 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 KRT17P6-201ENST00000453795 1220 ntBASIC12.22□□□□□ -0.45
CXCL1P09341 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.22□□□□□ -0.45
CXCL1P09341 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.22□□□□□ -0.45
CXCL1P09341 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 NSUN5P1-202ENST00000421140 1535 ntBASIC12.21□□□□□ -0.45
CXCL1P09341 NSUN5P2-203ENST00000457352 1529 ntBASIC12.21□□□□□ -0.45
CXCL1P09341 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.21□□□□□ -0.45
CXCL1P09341 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 AL591122.2-201ENST00000624125 1853 ntBASIC12.21□□□□□ -0.45
CXCL1P09341 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC12.21□□□□□ -0.45
CXCL1P09341 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
CXCL1P09341 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC12.21□□□□□ -0.45
CXCL1P09341 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC12.21□□□□□ -0.45
CXCL1P09341 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC12.21□□□□□ -0.45
CXCL1P09341 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC12.21□□□□□ -0.45
CXCL1P09341 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC12.21□□□□□ -0.45
CXCL1P09341 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC12.21□□□□□ -0.45
CXCL1P09341 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC12.21□□□□□ -0.45
CXCL1P09341 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC12.21□□□□□ -0.45
CXCL1P09341 AF228730.7-201ENST00000641842 219 ntBASIC12.21□□□□□ -0.45
CXCL1P09341 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC12.21□□□□□ -0.45
CXCL1P09341 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.21□□□□□ -0.45
CXCL1P09341 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CXCL1P09341 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
CXCL1P09341 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
CXCL1P09341 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.21□□□□□ -0.46
CXCL1P09341 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.21□□□□□ -0.46
CXCL1P09341 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
CXCL1P09341 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.21□□□□□ -0.46
CXCL1P09341 MTHFR-210ENST00000641407 2387 ntBASIC12.21□□□□□ -0.46
CXCL1P09341 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
CXCL1P09341 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
CXCL1P09341 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.46
CXCL1P09341 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
CXCL1P09341 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
CXCL1P09341 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
CXCL1P09341 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
CXCL1P09341 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 AC130686.1-201ENST00000622936 2466 ntBASIC12.2□□□□□ -0.46
CXCL1P09341 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms