Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 AL353801.3-201ENST00000609898 542 ntBASIC11.87□□□□□ -0.51
HLA-DQA1P01909 AC091076.1-201ENST00000610741 619 ntBASIC11.87□□□□□ -0.51
HLA-DQA1P01909 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 STK33-217ENST00000534493 1895 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC11.87□□□□□ -0.51
HLA-DQA1P01909 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 TKT-202ENST00000423516 2075 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 AL122018.1-201ENST00000446607 2310 ntBASIC11.86□□□□□ -0.51
HLA-DQA1P01909 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DQA1P01909 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DQA1P01909 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DQA1P01909 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DQA1P01909 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DQA1P01909 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DQA1P01909 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DQA1P01909 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms