Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP1O15259 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP1O15259 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC19.75■□□□□ 0.75
NPHP1O15259 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP1O15259 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
NPHP1O15259 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.74■□□□□ 0.75
NPHP1O15259 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC19.74■□□□□ 0.75
NPHP1O15259 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 MPV17-206ENST00000402722 827 ntTSL 3 BASIC19.74■□□□□ 0.75
NPHP1O15259 KRT18P43-201ENST00000469825 1281 ntBASIC19.74■□□□□ 0.75
NPHP1O15259 TPI1-206ENST00000488464 791 ntTSL 5 BASIC19.74■□□□□ 0.75
NPHP1O15259 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.74■□□□□ 0.75
NPHP1O15259 AP001582.1-201ENST00000525856 295 ntBASIC19.74■□□□□ 0.75
NPHP1O15259 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
NPHP1O15259 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.74■□□□□ 0.75
NPHP1O15259 AC023310.1-201ENST00000554836 735 ntBASIC19.74■□□□□ 0.75
NPHP1O15259 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.74■□□□□ 0.75
NPHP1O15259 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.74■□□□□ 0.75
NPHP1O15259 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.74■□□□□ 0.75
NPHP1O15259 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
NPHP1O15259 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
NPHP1O15259 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.74■□□□□ 0.75
NPHP1O15259 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.74■□□□□ 0.75
NPHP1O15259 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP1O15259 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
NPHP1O15259 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.73■□□□□ 0.75
NPHP1O15259 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.73■□□□□ 0.75
NPHP1O15259 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
NPHP1O15259 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP1O15259 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.73■□□□□ 0.75
NPHP1O15259 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC19.73■□□□□ 0.75
NPHP1O15259 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP1O15259 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP1O15259 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.73■□□□□ 0.75
NPHP1O15259 AL118558.3-201ENST00000607414 1079 ntBASIC19.73■□□□□ 0.75
NPHP1O15259 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP1O15259 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC19.73■□□□□ 0.75
NPHP1O15259 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.73■□□□□ 0.75
NPHP1O15259 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP1O15259 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP1O15259 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP1O15259 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP1O15259 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP1O15259 AL118508.1-201ENST00000613502 2345 ntBASIC19.73■□□□□ 0.75
NPHP1O15259 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.72■□□□□ 0.75
NPHP1O15259 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 AL121723.1-201ENST00000445194 1519 ntBASIC19.72■□□□□ 0.75
NPHP1O15259 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
NPHP1O15259 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP1O15259 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP1O15259 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms