Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SSX2IPQ9Y2D8 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX2IPQ9Y2D8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 TMEM14DP-201ENST00000422205 345 ntBASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 AC233724.13-201ENST00000598383 410 ntBASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 AC006449.5-201ENST00000610658 2098 ntBASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.91■□□□□ 0.3
SSX2IPQ9Y2D8 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 ACTG1P3-201ENST00000431775 1114 ntBASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 TARDBPP1-201ENST00000442013 1203 ntBASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 FAM86LP-201ENST00000478302 853 ntBASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 AC104989.1-201ENST00000519711 778 ntBASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 CU634019.7-201ENST00000624153 1185 ntBASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 FP236241.2-201ENST00000624906 1185 ntBASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SSX2IPQ9Y2D8 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.89■□□□□ 0.3
SSX2IPQ9Y2D8 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.89■□□□□ 0.3
SSX2IPQ9Y2D8 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.89■□□□□ 0.29
SSX2IPQ9Y2D8 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms