Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 AC009477.1-201ENST00000452936 217 ntBASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
AP4E1Q9UPM8 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 C18orf15-201ENST00000623680 2534 ntBASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 AC112693.3-201ENST00000624819 1983 ntBASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 AC015922.1-201ENST00000421102 1152 ntBASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4E1Q9UPM8 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 AC144831.1-201ENST00000573312 2656 ntBASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.28■□□□□ 0.2
AP4E1Q9UPM8 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms