Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LHX3Q9UBR4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 C1QBPP1-201ENST00000400117 770 ntBASIC15.71■□□□□ 0.11
LHX3Q9UBR4 NME2P1-201ENST00000426182 414 ntBASIC15.71■□□□□ 0.11
LHX3Q9UBR4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 INE1-201ENST00000456273 945 ntBASIC15.71■□□□□ 0.11
LHX3Q9UBR4 RN7SL752P-201ENST00000463779 287 ntBASIC15.71■□□□□ 0.11
LHX3Q9UBR4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 AC133539.2-201ENST00000604757 467 ntBASIC15.71■□□□□ 0.11
LHX3Q9UBR4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 RPSAP52-203ENST00000622976 1023 ntBASIC15.71■□□□□ 0.11
LHX3Q9UBR4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LHX3Q9UBR4 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LHX3Q9UBR4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
LHX3Q9UBR4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
LHX3Q9UBR4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.71■□□□□ 0.1
LHX3Q9UBR4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.71■□□□□ 0.1
LHX3Q9UBR4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.71■□□□□ 0.1
LHX3Q9UBR4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 KRT8P22-201ENST00000562317 1415 ntBASIC15.7■□□□□ 0.1
LHX3Q9UBR4 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 CU639417.3-201ENST00000624240 1404 ntBASIC15.7■□□□□ 0.1
LHX3Q9UBR4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 RN7SL837P-201ENST00000463010 287 ntBASIC15.7■□□□□ 0.1
LHX3Q9UBR4 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LHX3Q9UBR4 IGHV3-72-202ENST00000621503 303 ntBASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms