Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.16■□□□□ 0.02
VPS13AQ96RL7 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 MST1L-201ENST00000442552 2185 ntBASIC15.16■□□□□ 0.02
VPS13AQ96RL7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 RBM8B-201ENST00000555532 525 ntBASIC15.16■□□□□ 0.02
VPS13AQ96RL7 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 AC090164.2-201ENST00000611487 516 ntBASIC15.16■□□□□ 0.02
VPS13AQ96RL7 FO393412.1-201ENST00000619841 382 ntBASIC15.16■□□□□ 0.02
VPS13AQ96RL7 AC138466.4-201ENST00000623965 852 ntBASIC15.16■□□□□ 0.02
VPS13AQ96RL7 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 PRAL-201ENST00000624952 3286 ntBASIC15.15■□□□□ 0.02
VPS13AQ96RL7 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 RPL7P35-201ENST00000446943 740 ntBASIC15.15■□□□□ 0.02
VPS13AQ96RL7 AC130709.1-201ENST00000484779 1212 ntBASIC15.15■□□□□ 0.02
VPS13AQ96RL7 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 CHMP1AP1-201ENST00000445563 662 ntBASIC15.15■□□□□ 0.02
VPS13AQ96RL7 MME-218ENST00000625667 363 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13AQ96RL7 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 RN7SL67P-201ENST00000492147 296 ntBASIC15.14■□□□□ 0.01
VPS13AQ96RL7 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 NAP1L6-202ENST00000641404 1222 ntBASIC15.14■□□□□ 0.01
VPS13AQ96RL7 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC020910.5-201ENST00000623668 1865 ntBASIC15.14■□□□□ 0.01
VPS13AQ96RL7 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AL357563.1-201ENST00000404728 395 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms