Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 DOC2GP-202ENST00000514950 1163 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 SPDYE22P-201ENST00000582158 798 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 CYP4F24P-201ENST00000586049 1580 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 AL592424.1-201ENST00000563624 1536 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 RN7SL692P-201ENST00000464677 288 ntBASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 AL109936.8-201ENST00000641772 604 ntBASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.25■□□□□ 0.03
CLIP3Q96DZ5 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 REXO1L8P-201ENST00000604378 1897 ntBASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms