Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 AC136604.1-201ENST00000418535 575 ntBASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 FAM58DP-201ENST00000428076 619 ntBASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 AC022145.2-201ENST00000598203 171 ntBASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ATG4AQ8WYN0 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 AL022342.1-201ENST00000400363 863 ntBASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 MKNK2P1-201ENST00000437526 628 ntBASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.29■□□□□ 0.2
ATG4AQ8WYN0 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.28■□□□□ 0.2
ATG4AQ8WYN0 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms