Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC116Q8IYX3 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 TARDBPP1-201ENST00000442013 1203 ntBASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 SERBP1P3-201ENST00000459980 809 ntBASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 TEX28P1-201ENST00000613479 1221 ntBASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 TEX28P2-201ENST00000617764 1221 ntBASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC116Q8IYX3 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC116Q8IYX3 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.03
CCDC116Q8IYX3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC116Q8IYX3 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC116Q8IYX3 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 AC097493.3-201ENST00000509725 367 ntBASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 GPALPP1-207ENST00000611650 899 ntBASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC116Q8IYX3 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms